SRR3550660_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550660_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	664470
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5972	0.8987614188751938	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTC	4767	0.7174138787304167	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCG	2634	0.3964061582915708	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGC	2618	0.3939982241485695	No Hit
GCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	1823	0.27435399641819797	No Hit
GAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT	1282	0.19293572320797028	No Hit
CTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGCT	985	0.1482384456785107	TruSeq Adapter, Index 13 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	873	0.13138290667750238	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTT	861	0.1295769560702515	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCTAG	20	7.031136E-4	45.0	1
TATAGCG	20	7.031136E-4	45.0	1
ACGTAAG	50	2.1827873E-11	45.0	1
TCGACAC	25	3.8890226E-5	45.0	34
ACGGGTC	30	2.1641135E-6	44.999996	5
GCGATAC	30	2.1641135E-6	44.999996	9
CGTTTTT	3255	0.0	42.09677	1
TAGCGAG	60	3.6379788E-12	41.249996	1
GCGATTC	45	1.9261279E-8	40.0	9
GCGATCT	45	1.9261279E-8	40.0	9
TTAACGG	45	1.9261279E-8	40.0	2
ATTGCGG	90	0.0	40.0	2
TCGATCA	40	3.4552795E-7	39.375	17
TACGGCT	350	0.0	39.214287	7
CGTAAGG	75	0.0	39.000004	2
GCTACGA	65	9.094947E-12	38.076927	10
AAGGGCG	215	0.0	37.67442	5
TTTCGCG	30	1.13940354E-4	37.499996	1
TGAACCG	30	1.13940354E-4	37.499996	1
AATGACG	30	1.13940354E-4	37.499996	1