SRR3550657_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550657_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	492552
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC	2895	0.5877552014812649	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCG	2276	0.46208319121635894	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	2143	0.43508096607058744	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGC	2062	0.418636001884065	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1814	0.3682859880784161	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	1654	0.33580210820380385	No Hit
CTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGCT	1290	0.26190128148906106	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	663	0.13460507723042442	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG	621	0.1260780587633387	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCT	610	0.1238447920219591	No Hit
ACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	558	0.11328753106271013	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCC	539	0.10943007032759994	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAG	25	3.8875478E-5	45.000004	1
TATGACG	30	2.1629658E-6	45.000004	1
CTCTCGC	25	3.8875478E-5	45.000004	11
ACACGAC	35	1.2100463E-7	45.0	26
TAGAACG	20	7.029358E-4	45.0	1
GACCCGT	20	7.029358E-4	45.0	10
AACGGTT	20	7.029358E-4	45.0	32
AAAGTCG	20	7.029358E-4	45.0	1
TGCGATG	20	7.029358E-4	45.0	1
GGTATAC	20	7.029358E-4	45.0	8
AGACACG	35	1.2100463E-7	45.0	24
CGTGTAA	20	7.029358E-4	45.0	20
TATAGCG	35	1.2100463E-7	45.0	1
GCGTGTA	20	7.029358E-4	45.0	19
GTGCGAT	20	7.029358E-4	45.0	23
TAATGCG	20	7.029358E-4	45.0	1
TCAACGG	20	7.029358E-4	45.0	2
CGTTTTT	1195	0.0	41.79916	1
TACGGCT	285	0.0	41.05263	7
CGATAGG	55	6.002665E-11	40.909092	2