##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550655_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 423251 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.340174033847525 33.0 31.0 34.0 30.0 34.0 2 32.491968122934146 34.0 31.0 34.0 31.0 34.0 3 32.46687662876165 34.0 31.0 34.0 30.0 34.0 4 35.96413475691729 37.0 35.0 37.0 35.0 37.0 5 36.022790259207895 37.0 35.0 37.0 35.0 37.0 6 36.04574354224798 37.0 35.0 37.0 35.0 37.0 7 36.05500754871223 37.0 36.0 37.0 35.0 37.0 8 35.91097244897236 37.0 35.0 37.0 35.0 37.0 9 37.78808555679727 39.0 38.0 39.0 35.0 39.0 10 37.566514904867326 39.0 37.0 39.0 35.0 39.0 11 37.485399916361686 39.0 37.0 39.0 35.0 39.0 12 37.34222246373901 39.0 37.0 39.0 35.0 39.0 13 37.252171879097745 39.0 37.0 39.0 34.0 39.0 14 38.515587677288416 40.0 38.0 41.0 34.0 41.0 15 38.58786630155629 40.0 38.0 41.0 35.0 41.0 16 38.67754358524847 40.0 38.0 41.0 35.0 41.0 17 38.60258806240269 40.0 38.0 41.0 35.0 41.0 18 38.54081384332228 40.0 38.0 41.0 35.0 41.0 19 38.50242054950845 40.0 37.0 41.0 34.0 41.0 20 38.374668931674115 40.0 37.0 41.0 34.0 41.0 21 38.35172509929097 40.0 37.0 41.0 34.0 41.0 22 38.3008144103617 40.0 37.0 41.0 34.0 41.0 23 38.248339637709066 40.0 37.0 41.0 34.0 41.0 24 38.215942785722895 40.0 37.0 41.0 34.0 41.0 25 38.17550578734604 40.0 36.0 41.0 34.0 41.0 26 38.14175512875339 40.0 36.0 41.0 34.0 41.0 27 38.12249468991213 40.0 36.0 41.0 34.0 41.0 28 38.040136940019046 40.0 36.0 41.0 34.0 41.0 29 37.98852690247631 40.0 36.0 41.0 34.0 41.0 30 37.93822105559113 40.0 36.0 41.0 34.0 41.0 31 37.87270201369873 40.0 36.0 41.0 34.0 41.0 32 37.72706030227926 40.0 36.0 41.0 33.0 41.0 33 37.63745626117836 40.0 36.0 41.0 33.0 41.0 34 37.537208417700135 40.0 36.0 41.0 33.0 41.0 35 37.43552407436722 40.0 35.0 41.0 33.0 41.0 36 37.38011251007086 40.0 35.0 41.0 33.0 41.0 37 37.33151014409889 40.0 35.0 41.0 33.0 41.0 38 37.24716066825595 40.0 35.0 41.0 33.0 41.0 39 37.165025008800924 40.0 35.0 41.0 33.0 41.0 40 37.04504419363451 40.0 35.0 41.0 32.0 41.0 41 37.00113644149689 39.0 35.0 41.0 32.0 41.0 42 36.948635679537674 39.0 35.0 41.0 32.0 41.0 43 36.899421383528924 39.0 35.0 41.0 32.0 41.0 44 36.87546396818909 39.0 35.0 41.0 32.0 41.0 45 36.77202652799403 39.0 35.0 41.0 32.0 41.0 46 36.69433976529294 39.0 35.0 41.0 31.0 41.0 47 36.56668737935646 39.0 35.0 41.0 31.0 41.0 48 36.544152287885915 39.0 35.0 41.0 31.0 41.0 49 36.50179208082202 39.0 35.0 41.0 31.0 41.0 50 36.39205341511302 39.0 35.0 41.0 31.0 41.0 51 35.49026227935669 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 10.0 10 13.0 11 9.0 12 9.0 13 11.0 14 7.0 15 13.0 16 20.0 17 28.0 18 81.0 19 159.0 20 326.0 21 568.0 22 953.0 23 1264.0 24 1670.0 25 2281.0 26 2943.0 27 3656.0 28 3732.0 29 4295.0 30 5317.0 31 6730.0 32 8530.0 33 11842.0 34 23663.0 35 35544.0 36 26862.0 37 39934.0 38 74029.0 39 168502.0 40 249.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.63061634821891 21.666339831447534 24.98824574543238 11.71479807490118 2 31.20890440896773 28.824976196157838 23.250742467235757 16.715376927638683 3 30.428988945094044 27.245771421685948 25.756820420979516 16.56841921224049 4 28.65557317053002 24.109570916548336 28.922554229050846 18.3123016838708 5 28.48451627993791 28.63950705373407 23.3613151534196 19.514661512908415 6 26.08688461456677 35.35538014086204 23.912052186527617 14.645683058043572 7 77.90341901141403 5.935721356830817 11.392294406864957 4.768565224890195 8 77.59461879593906 8.261055496620209 9.159104172228771 4.985221535211966 9 71.35505881852612 7.8551497810991595 10.883140264287622 9.906651136087097 10 42.36918518798538 24.303073117370072 18.379637614559684 14.948104080084867 11 33.15006934419529 22.895870299184175 24.531306482441863 19.422753874178678 12 29.012099203545887 21.67201022561081 28.490422940524653 20.825467630318652 13 24.717720690559503 23.826760007655032 31.151491668064573 20.30402763372089 14 20.455238144741536 29.09975404665317 28.549725812815563 21.89528199578973 15 19.497177797571656 25.054636610427384 34.977117596886956 20.47106799511401 16 22.447909160285505 24.88854131472814 30.558699211578944 22.10485031340741 17 21.99734909072867 25.83691473853576 28.133660641085314 24.032075529650253 18 22.13580121488195 26.170050395628124 28.9190102326988 22.775138156791126 19 24.91996474904962 26.35292060739372 26.347013946806978 22.380100696749682 20 26.668336282725853 26.522559899445007 27.85652012635528 18.952583691473855 21 24.885469851223032 28.22745841120281 26.436795187725487 20.450276549848674 22 22.30355037554548 25.297282227330825 27.667270721156008 24.731896675967686 23 23.641054598807802 26.347013946806978 27.864316918329784 22.14761453605544 24 24.11665890925243 24.65298369052879 28.112396662973033 23.11796073724575 25 22.012942674677674 28.7049528530352 26.10389579705659 23.17820867523054 26 20.98660133112503 28.04576953155456 27.605841451053863 23.361787686266542 27 23.622862084200626 26.981389293823288 27.02651618070601 22.369232441270075 28 20.884061703339153 27.559769498477266 28.60524842233096 22.950920375852625 29 22.380336963173153 26.521851100174597 27.22616130853796 23.87165062811429 30 22.286066660208718 27.706490947451982 26.207616756959816 23.799825635379477 31 25.10756028928461 26.43348745779691 23.536624839634165 24.922327413284314 32 24.943827657820066 28.307552728759056 23.386123127883927 23.36249648553695 33 23.64058206596086 27.516532742982296 24.10626318661976 24.736622004437084 34 21.776676251207913 27.752562900028586 25.192143668886786 25.27861717987672 35 21.34218229844702 27.952680560707478 25.101417362274397 25.60371977857111 36 21.905441451998932 30.03678668213424 25.715710063295777 22.34206180257105 37 22.009162411902157 27.97063680889118 26.33992595410288 23.68027482510378 38 22.54265199609688 28.500818663157325 23.980569449333846 24.975959891411954 39 22.845781817408582 26.35551953805189 26.26526576428644 24.533432880253088 40 21.982936838897015 27.062901209920355 27.880855567972667 23.073306383209964 41 19.446144250102186 27.793200724865386 26.63809418052172 26.122560844510705 42 20.75813169962977 27.052741753711157 28.363311604697923 23.825814941961156 43 23.026761897786418 25.07448298999884 27.60489638535999 24.29385872685475 44 22.26527521494338 25.5748952749078 26.48026820964392 25.6795613005049 45 21.350687889691933 25.2162428440807 26.127994972250505 27.305074293976862 46 22.983761408714923 27.777370874492913 25.763199614413196 23.475668102378965 47 21.00762904281384 25.665385315096717 29.62402924033257 23.70295640175688 48 21.226411750946838 24.95587724541702 27.989774389192227 25.827936614443914 49 21.399831305773642 24.25629236552306 29.71381048125108 24.630065847452222 50 19.891978991189625 24.860189343911767 28.97571417433154 26.272117490567066 51 20.02476072117963 24.64235170147265 26.834904111272035 28.497983466075688 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 154.0 1 471.0 2 788.0 3 1650.5 4 2513.0 5 1769.5 6 1026.0 7 987.5 8 949.0 9 980.5 10 1012.0 11 933.5 12 855.0 13 906.0 14 957.0 15 932.0 16 907.0 17 870.5 18 834.0 19 979.0 20 1124.0 21 1230.5 22 1337.0 23 1407.5 24 1478.0 25 1886.5 26 2909.5 27 3524.0 28 4187.5 29 4851.0 30 6068.0 31 7285.0 32 8123.5 33 8962.0 34 9517.0 35 10072.0 36 10885.5 37 11699.0 38 12544.0 39 13389.0 40 15449.0 41 17509.0 42 19064.5 43 20620.0 44 23589.0 45 26558.0 46 35597.5 47 44637.0 48 41815.5 49 38994.0 50 38287.0 51 37580.0 52 33418.5 53 29257.0 54 26512.5 55 23768.0 56 22540.5 57 21313.0 58 20802.5 59 20292.0 60 19198.5 61 18105.0 62 16842.0 63 15579.0 64 13273.5 65 10968.0 66 9339.5 67 7711.0 68 6616.5 69 5522.0 70 4507.5 71 3493.0 72 2781.0 73 2069.0 74 1779.0 75 1161.5 76 834.0 77 657.5 78 481.0 79 363.5 80 246.0 81 207.0 82 168.0 83 98.5 84 29.0 85 20.0 86 11.0 87 7.0 88 3.0 89 2.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 423251.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.788611925317728 #Duplication Level Percentage of deduplicated Percentage of total 1 72.02792232293203 22.17639748187684 2 9.351921242877 5.7586534780614995 3 3.3018283919071267 3.0497613900727316 4 1.8576828308935442 2.2878190304282784 5 1.28289062885425 1.974921085721016 6 1.05049979435186 1.9406058297555298 7 0.8938608728141024 1.9264514869809426 8 0.7938018340199086 1.9552045290595548 9 0.6784976582689319 1.8801000983411091 >10 8.624322506694876 48.89798162830306 >50 0.08298520769509267 1.7913384368587866 >100 0.04533451161120803 2.698126633963875 >500 0.004610289316394037 0.8665706146610851 >1k 0.0038419077636616976 2.7960682759157423 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTC 3551 0.8389820697411229 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG 3032 0.7163597959603166 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC 2889 0.6825736974041408 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1232 0.2910802337147461 No Hit GCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC 1115 0.263437062168784 No Hit CCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC 719 0.16987555847475846 No Hit GAATGACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT 648 0.15310064240840543 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 636 0.15026544532676828 No Hit GAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT 619 0.14624891612778232 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 525 0.12403987232162475 No Hit CTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT 516 0.1219134745103969 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTC 495 0.11695187961753191 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCACATTCGTA 495 0.11695187961753191 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCACATT 476 0.11246281757160645 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 425 0.10041322997464862 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1256937372859131 0.0 2 0.0 0.0 0.0 0.7475469638583252 0.0 3 0.0 0.0 0.0 1.0667429019659729 0.0 4 0.0 0.0 0.0 1.6663870847322275 0.0 5 0.0 0.0 0.0 3.746476676960007 0.0 6 0.0 0.0 0.0 4.562304637201094 0.0 7 0.0 0.0 0.0 5.414517626656523 0.0 8 0.0 0.0 0.0 6.610025729413516 0.0 9 0.0 0.0 0.0 7.100751090960211 0.0 10 0.0 0.0 0.0 8.692005453029054 0.0 11 0.0 0.0 0.0 9.980129993786193 0.0 12 0.0 0.0 0.0 11.681957042038885 0.0 13 0.0 0.0 0.0 12.1131432648712 0.0 14 0.0 0.0 0.0 12.309716929198041 0.0 15 0.0 0.0 0.0 12.712078648367045 0.0 16 0.0 0.0 0.0 13.307706301934314 0.0 17 0.0 0.0 0.0 13.988626134374165 0.0 18 0.0 0.0 0.0 14.717035517931441 0.0 19 0.0 0.0 0.0 15.307229043758904 0.0 20 0.0 0.0 0.0 15.784723485591293 0.0 21 0.0 0.0 0.0 16.325537328913576 0.0 22 0.0 0.0 0.0 16.909824194154297 0.0 23 0.0 0.0 0.0 17.469775617777632 0.0 24 0.0 0.0 0.0 17.918918088793646 0.0 25 0.0 0.0 0.0 18.341126187534112 0.0 26 0.0 0.0 0.0 18.752702297218434 0.0 27 0.0 0.0 0.0 19.141124297402722 0.0 28 0.0 0.0 0.0 19.536398023867633 0.0 29 0.0 0.0 0.0 19.92789148755703 0.0 30 0.0 0.0 0.0 20.39995180164961 0.0 31 0.0 0.0 0.0 20.83798975076255 0.0 32 0.0 0.0 0.0 21.267758375054047 0.0 33 0.0 0.0 0.0 21.663268367942425 0.0 34 2.3626642346976143E-4 0.0 0.0 22.09350952508086 0.0 35 2.3626642346976143E-4 0.0 0.0 22.523750682219298 0.0 36 2.3626642346976143E-4 0.0 0.0 22.931310262704635 0.0 37 2.3626642346976143E-4 0.0 0.0 23.365567949042056 0.0 38 2.3626642346976143E-4 0.0 0.0 23.755643814190634 0.0 39 7.087992704092843E-4 0.0 0.0 24.186830037022947 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACTTC 25 3.8866146E-5 45.000004 45 TCACGGG 55 1.8189894E-12 45.0 3 TACGGGA 95 0.0 45.0 4 CGAATTA 20 7.028231E-4 45.0 17 GCGATAT 20 7.028231E-4 45.0 9 ACGGGAT 130 0.0 39.80769 5 CGGCGAA 40 3.451314E-7 39.375 31 GCATAGG 75 0.0 39.0 2 AAGTACG 35 6.238939E-6 38.57143 1 ACGTTAG 35 6.238939E-6 38.57143 1 TTAGCGG 105 0.0 38.57143 2 CGCGAGG 35 6.238939E-6 38.57143 2 TAGCCGT 35 6.238939E-6 38.57143 44 AAAACGC 35 6.238939E-6 38.57143 44 TATTGCG 35 6.238939E-6 38.57143 1 TTTGCGC 35 6.238939E-6 38.57143 13 TGGGACG 70 0.0 38.57143 6 CTACGGG 100 0.0 38.250004 3 TACGGCT 335 0.0 37.61194 7 CGGCGCA 30 1.1387034E-4 37.500004 22 >>END_MODULE