SRR3550654_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550654_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	386487
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC	1013	0.26210454685409856	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	771	0.19948924543386973	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	686	0.1774962676623017	No Hit
CCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC	540	0.1397200940781967	No Hit
CTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGCT	517	0.13376905303412534	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	408	0.10556629330352638	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	20	7.027468E-4	45.000004	1
GATCGAT	20	7.027468E-4	45.000004	9
CGAGTAC	20	7.027468E-4	45.000004	22
TTTCGAA	20	7.027468E-4	45.000004	36
GGCGTAC	20	7.027468E-4	45.000004	41
ATCCGTT	20	7.027468E-4	45.000004	28
ACGATTG	20	7.027468E-4	45.000004	1
GGGCGTA	20	7.027468E-4	45.000004	40
TTCGAAA	20	7.027468E-4	45.000004	37
GCGTACA	20	7.027468E-4	45.000004	42
AACGTAG	25	3.8859842E-5	45.0	1
CGATTCT	25	3.8859842E-5	45.0	9
CACCGGG	25	3.8859842E-5	45.0	3
CATAGCG	30	2.1617489E-6	44.999996	1
TACGAAT	110	0.0	42.954544	12
CGTTAGG	65	0.0	41.53846	2
ATAGCGG	60	3.6379788E-12	41.249996	2
CGAATAT	120	0.0	41.249996	14
GTAGGGC	115	0.0	41.086956	4
GCGTTAG	45	1.9226718E-8	40.0	1