SRR3550646_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550646_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	296832
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGC	1336	0.4500862440707201	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTC	1175	0.39584680896938335	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCG	1110	0.3739489003880983	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	1066	0.3591257007330746	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	588	0.19809184993531695	No Hit
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	559	0.18832201379905134	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	553	0.18630066839154807	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	515	0.1734988141440276	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	472	0.15901250539025444	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	396	0.13340879689521346	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	380	0.12801854247520483	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACAAGT	299	0.10073037947391117	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGCG	20	7.024821E-4	45.000004	1
CCTTACC	20	7.024821E-4	45.000004	38
GCCTTAC	20	7.024821E-4	45.000004	37
TTAATCG	30	2.1600426E-6	45.000004	20
CGAAAGG	40	6.7848305E-9	45.000004	2
GCGAATG	30	2.1600426E-6	45.000004	1
TGGACGG	20	7.024821E-4	45.000004	2
CGTTGAT	30	2.1600426E-6	45.000004	25
CCCGTGT	20	7.024821E-4	45.000004	28
GAGCGTA	20	7.024821E-4	45.000004	9
GCGGGTT	20	7.024821E-4	45.000004	5
GACGGTC	20	7.024821E-4	45.000004	29
GCGATCA	20	7.024821E-4	45.000004	9
CGGTCTA	20	7.024821E-4	45.000004	31
AAATGCG	20	7.024821E-4	45.000004	1
AACACGT	20	7.024821E-4	45.000004	41
GTCATAG	25	3.883792E-5	45.0	29
CTATGCG	25	3.883792E-5	45.0	1
CGTATGG	25	3.883792E-5	45.0	2
TTGTGCG	25	3.883792E-5	45.0	1