##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550646_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 296832 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43789416235446 33.0 31.0 34.0 31.0 34.0 2 32.57932096269944 34.0 31.0 34.0 31.0 34.0 3 32.56413728978008 34.0 31.0 34.0 31.0 34.0 4 36.04103668068133 37.0 35.0 37.0 35.0 37.0 5 36.09943671841311 37.0 35.0 37.0 35.0 37.0 6 36.133007896722724 37.0 36.0 37.0 35.0 37.0 7 36.110250916343254 37.0 37.0 37.0 35.0 37.0 8 35.98695558430358 37.0 36.0 37.0 35.0 37.0 9 37.86325935209142 39.0 38.0 39.0 35.0 39.0 10 37.712935263044415 39.0 37.0 39.0 35.0 39.0 11 37.62130767572229 39.0 37.0 39.0 35.0 39.0 12 37.43088346269944 39.0 37.0 39.0 35.0 39.0 13 37.3018037138853 39.0 37.0 39.0 34.0 39.0 14 38.58787125377318 40.0 38.0 41.0 35.0 41.0 15 38.683996334627 40.0 38.0 41.0 35.0 41.0 16 38.76245148771022 40.0 38.0 41.0 35.0 41.0 17 38.704516359422165 40.0 38.0 41.0 35.0 41.0 18 38.68774593035791 40.0 38.0 41.0 35.0 41.0 19 38.63973223911169 40.0 38.0 41.0 35.0 41.0 20 38.54795978870202 40.0 37.0 41.0 35.0 41.0 21 38.47854004959034 40.0 37.0 41.0 35.0 41.0 22 38.43148649741268 40.0 37.0 41.0 35.0 41.0 23 38.39634540750323 40.0 37.0 41.0 35.0 41.0 24 38.33252142626132 40.0 37.0 41.0 34.0 41.0 25 38.26544307891332 40.0 37.0 41.0 34.0 41.0 26 38.25875242561449 40.0 37.0 41.0 34.0 41.0 27 38.21369326757223 40.0 37.0 41.0 34.0 41.0 28 38.15143246011212 40.0 36.0 41.0 34.0 41.0 29 38.118255444156965 40.0 36.0 41.0 34.0 41.0 30 38.05784753665373 40.0 36.0 41.0 34.0 41.0 31 38.01093210974558 40.0 36.0 41.0 34.0 41.0 32 37.881370606942646 40.0 36.0 41.0 34.0 41.0 33 37.819092954937474 40.0 36.0 41.0 34.0 41.0 34 37.68427258516602 40.0 36.0 41.0 33.0 41.0 35 37.62330543876671 40.0 35.0 41.0 33.0 41.0 36 37.545096216041394 40.0 35.0 41.0 33.0 41.0 37 37.41648474557999 40.0 35.0 41.0 33.0 41.0 38 37.37533352199224 40.0 35.0 41.0 33.0 41.0 39 37.312314710004316 40.0 35.0 41.0 33.0 41.0 40 37.20572242884864 40.0 35.0 41.0 33.0 41.0 41 37.14601862332902 39.0 35.0 41.0 33.0 41.0 42 37.07824628072445 39.0 35.0 41.0 33.0 41.0 43 37.007563200733074 39.0 35.0 41.0 33.0 41.0 44 36.95339788163001 39.0 35.0 41.0 32.0 41.0 45 36.88147504312204 39.0 35.0 41.0 32.0 41.0 46 36.8179138367831 39.0 35.0 41.0 32.0 41.0 47 36.70898690168176 39.0 35.0 41.0 32.0 41.0 48 36.68522261750755 39.0 35.0 41.0 32.0 41.0 49 36.637825436610605 39.0 35.0 41.0 32.0 41.0 50 36.51576649417853 39.0 35.0 41.0 32.0 41.0 51 35.60203414726175 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 4.0 10 3.0 11 10.0 12 9.0 13 2.0 14 8.0 15 6.0 16 15.0 17 25.0 18 54.0 19 106.0 20 173.0 21 305.0 22 542.0 23 704.0 24 983.0 25 1329.0 26 1715.0 27 2177.0 28 2442.0 29 2892.0 30 3401.0 31 4197.0 32 5499.0 33 7783.0 34 16523.0 35 26882.0 36 18455.0 37 28140.0 38 51450.0 39 120858.0 40 137.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.203118262181974 21.218736524363948 23.76900064683053 10.809144566623544 2 31.14286869340233 27.04358020698577 24.30802608883139 17.50552501078051 3 32.77274687365244 25.310950301854245 25.37563335489435 16.540669469598964 4 29.68076218197499 25.7179145105649 25.776533527382494 18.82478978007762 5 27.316798727899954 30.603843251401464 23.172366860715826 18.90699115998275 6 26.359354786545925 36.416221970677014 22.672083872358776 14.552339370418283 7 78.73948900388098 6.771844006037085 9.830476498490729 4.658190491591204 8 78.83381845623113 8.006212268219059 8.17533150064683 4.984637774902975 9 71.55731188012075 9.490553579128935 10.355015631737817 8.597118909012504 10 43.67352576541613 26.058848102630446 16.202431004743424 14.065195127210004 11 34.85439575247952 24.59370957309185 21.842658473479947 18.709236200948684 12 31.408338723587754 22.0643326865028 26.086810047434238 20.440518542475207 13 25.184279322984043 26.238074062095727 27.777665480810693 20.79998113410953 14 19.954048081069427 30.313780185424754 26.878503665373003 22.853668068132816 15 20.351579344545062 25.74452889176369 34.521884432945235 19.382007330746013 16 22.687917744717552 24.69915642518327 31.003395860284606 21.609529969814574 17 21.58662138852954 26.017073630875377 27.629770375161705 24.766534605433378 18 23.83233613626563 26.112076865028026 27.839316515739544 22.216270482966795 19 25.643124730487276 26.83234961190168 25.42145051746442 22.103075140146615 20 27.986874730487276 25.88703374299267 26.652786761535147 19.47330476498491 21 25.77552285467874 26.956325463561882 26.579007654161273 20.689144027598104 22 23.804037300560587 25.592254204398447 25.722967874083658 24.880740620957308 23 25.184279322984043 26.298714424320828 26.34891116860716 22.16809508408797 24 24.22414025442001 24.90769189305735 27.46873652436395 23.39943132815869 25 22.83278083225528 27.128139823199653 26.746105541181542 23.292973803363516 26 21.873652436395 28.50737117291936 26.889957956015525 22.729018434670117 27 24.595730918499353 27.435047434238896 26.750822013799052 21.2183996334627 28 20.222887020267358 28.454142410521776 28.591593898232 22.73137667097887 29 22.484772531263474 26.08108290211298 28.28603385079776 23.148110715825787 30 22.99347779215179 26.839087429926696 26.81280993962915 23.354624838292366 31 24.67490028029323 27.564413540319105 23.545305088400173 24.215381090987496 32 25.509379042690817 28.746900603708497 24.545197283311772 21.198523070288918 33 24.63110446313066 27.790804225959466 23.108357589478224 24.469733721431652 34 22.091620849504096 28.03841903837861 25.890065761103926 23.979894351013368 35 23.658500431220354 27.052002479517036 25.012128072445016 24.277369016817595 36 24.773946205260888 28.4989489003881 24.360581069426477 22.366523824924535 37 24.78876940491591 29.595528783958603 25.240203212591634 20.375498598533852 38 21.558322552824492 29.64505174644243 23.26197984044847 25.534645860284606 39 25.12431274256145 26.627856834842607 25.707807783527382 22.540022639068564 40 23.034578482104358 26.609664726175076 27.629096593359208 22.726660198361362 41 20.63052501078051 28.330840340664082 25.653905239327297 25.384729409228115 42 23.751819210866753 26.41730002156102 26.004945558430357 23.82593520914187 43 25.57406209573092 25.031330853816304 25.34295493747305 24.05165211297973 44 22.746873652436395 26.92735284605433 25.94396830530401 24.38180519620526 45 22.66298781802501 25.929481996550237 24.813362440707202 26.594167744717552 46 22.780225851660198 28.761386912462267 25.202808322552823 23.255578913324708 47 21.877695127210004 26.43953482104355 28.58822498921949 23.09454506252695 48 22.828401250539027 25.00505336351876 27.70759217335058 24.458953212591634 49 22.596620310478656 25.033689090125055 28.782947930142306 23.586742669253987 50 20.85657880551962 26.240432298404485 27.42527759810263 25.477711297973265 51 21.660400495903406 25.61112009486848 24.85480002156102 27.8736793876671 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 108.0 1 352.5 2 597.0 3 897.5 4 1198.0 5 866.0 6 534.0 7 540.5 8 547.0 9 551.0 10 555.0 11 566.0 12 577.0 13 556.5 14 536.0 15 572.5 16 609.0 17 598.0 18 587.0 19 592.0 20 597.0 21 764.5 22 932.0 23 839.5 24 747.0 25 1318.5 26 2066.0 27 2242.0 28 3104.0 29 3966.0 30 4223.0 31 4480.0 32 5039.0 33 5598.0 34 6176.0 35 6754.0 36 6895.5 37 7037.0 38 7640.5 39 8244.0 40 10571.5 41 12899.0 42 14541.5 43 16184.0 44 18013.0 45 19842.0 46 23860.5 47 27879.0 48 27715.0 49 27551.0 50 26782.5 51 26014.0 52 23270.5 53 20527.0 54 18444.0 55 16361.0 56 15698.0 57 15035.0 58 15157.0 59 15279.0 60 14711.5 61 14144.0 62 13357.5 63 12571.0 64 10515.0 65 8459.0 66 7026.5 67 5594.0 68 4689.0 69 3784.0 70 3316.5 71 2849.0 72 2180.5 73 1512.0 74 1201.0 75 753.5 76 617.0 77 412.5 78 208.0 79 211.0 80 214.0 81 144.0 82 74.0 83 41.0 84 8.0 85 4.5 86 1.0 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 296832.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.827754420008624 #Duplication Level Percentage of deduplicated Percentage of total 1 72.21105527638191 20.81682567917206 2 9.551244595068365 5.5068186718413115 3 3.225429472946126 2.789456662354463 4 1.6360874138132524 1.8865890470030184 5 1.1324062171321725 1.6322364165588614 6 0.8729694986560711 1.509945019404916 7 0.7771415215612949 1.568227145321259 8 0.6439172607222157 1.4850150927123762 9 0.6310622881851116 1.6372897800776196 >10 9.172607222157298 54.70805034497628 >50 0.09115344162673834 1.759918068132816 >100 0.04557672081336917 2.374407072013799 >500 0.004674535468037863 0.746213346269944 >1k 0.004674535468037863 1.5790076541612765 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGC 1336 0.4500862440707201 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTC 1175 0.39584680896938335 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCG 1110 0.3739489003880983 No Hit GCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC 1066 0.3591257007330746 No Hit CCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC 588 0.19809184993531695 No Hit CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT 559 0.18832201379905134 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 553 0.18630066839154807 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 515 0.1734988141440276 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 472 0.15901250539025444 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 396 0.13340879689521346 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 380 0.12801854247520483 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACAAGT 299 0.10073037947391117 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.001010672703751617 0.0 0.0 0.19472294092281156 0.0 2 0.001010672703751617 0.0 0.0 0.9527274687365244 0.0 3 0.001010672703751617 0.0 0.0 1.2771534066407935 0.0 4 0.001010672703751617 0.0 0.0 1.7508220137990513 0.0 5 0.001010672703751617 0.0 0.0 3.2189925614489003 0.0 6 0.001010672703751617 0.0 0.0 3.7947391116860714 0.0 7 0.001010672703751617 0.0 0.0 4.4392114057783525 0.0 8 0.001010672703751617 0.0 0.0 5.435734691677447 0.0 9 0.001010672703751617 0.0 0.0 5.77498382923674 0.0 10 0.001010672703751617 0.0 0.0 6.9116537300560585 0.0 11 0.001010672703751617 0.0 0.0 8.044617830961622 0.0 12 0.001010672703751617 0.0 0.0 9.341647800776197 0.0 13 0.001010672703751617 0.0 0.0 9.725703428201811 0.0 14 0.001010672703751617 0.0 0.0 9.885726606295817 0.0 15 0.001010672703751617 0.0 0.0 10.254285252263907 0.0 16 0.001010672703751617 0.0 0.0 10.869448037947391 0.0 17 0.001010672703751617 0.0 0.0 11.577255821474774 0.0 18 0.001010672703751617 0.0 0.0 12.281694695989652 0.0 19 0.001010672703751617 0.0 0.0 12.82509971970677 0.0 20 0.001010672703751617 0.0 0.0 13.309885726606296 0.0 21 0.001010672703751617 0.0 0.0 13.838130659767142 0.0 22 0.001010672703751617 0.0 0.0 14.414887882708063 0.0 23 0.001010672703751617 0.0 0.0 14.955597779215179 0.0 24 0.0013475636050021562 0.0 0.0 15.398946205260888 0.0 25 0.0013475636050021562 0.0 0.0 15.834209249676585 0.0 26 0.0013475636050021562 0.0 0.0 16.183565114273392 0.0 27 0.0013475636050021562 0.0 0.0 16.55717712376024 0.0 28 0.0013475636050021562 0.0 0.0 16.916639715394567 0.0 29 0.001684454506252695 0.0 0.0 17.27643919793014 0.0 30 0.001684454506252695 0.0 0.0 17.73696905993963 0.0 31 0.001684454506252695 0.0 0.0 18.170547649849073 0.0 32 0.002021345407503234 0.0 0.0 18.57077404053471 0.0 33 0.002021345407503234 0.0 0.0 18.93124730487279 0.0 34 0.002358236308753773 0.0 0.0 19.31900873221216 0.0 35 0.002358236308753773 0.0 0.0 19.7192351228978 0.0 36 0.002358236308753773 0.0 0.0 20.128557567917206 0.0 37 0.002358236308753773 0.0 0.0 20.529120849504096 0.0 38 0.002358236308753773 0.0 0.0 20.940464639931005 0.0 39 0.002358236308753773 0.0 0.0 21.352482212160414 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGCG 20 7.024821E-4 45.000004 1 CCTTACC 20 7.024821E-4 45.000004 38 GCCTTAC 20 7.024821E-4 45.000004 37 TTAATCG 30 2.1600426E-6 45.000004 20 CGAAAGG 40 6.7848305E-9 45.000004 2 GCGAATG 30 2.1600426E-6 45.000004 1 TGGACGG 20 7.024821E-4 45.000004 2 CGTTGAT 30 2.1600426E-6 45.000004 25 CCCGTGT 20 7.024821E-4 45.000004 28 GAGCGTA 20 7.024821E-4 45.000004 9 GCGGGTT 20 7.024821E-4 45.000004 5 GACGGTC 20 7.024821E-4 45.000004 29 GCGATCA 20 7.024821E-4 45.000004 9 CGGTCTA 20 7.024821E-4 45.000004 31 AAATGCG 20 7.024821E-4 45.000004 1 AACACGT 20 7.024821E-4 45.000004 41 GTCATAG 25 3.883792E-5 45.0 29 CTATGCG 25 3.883792E-5 45.0 1 CGTATGG 25 3.883792E-5 45.0 2 TTGTGCG 25 3.883792E-5 45.0 1 >>END_MODULE