SRR3550643_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550643_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	213611
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	1064	0.49810168951973444	No Hit
GCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	811	0.3796620960531059	No Hit
CTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGCT	550	0.25747737710136653	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	429	0.20083235413906586	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	341	0.15963597380284725	No Hit
TCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	322	0.15074130077570913	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCC	268	0.12546170375121132	No Hit
CGCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTG	227	0.10626793564001853	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAAAGA	20	7.0203794E-4	45.000004	26
GGCGTAG	20	7.0203794E-4	45.000004	1
CTAACGG	20	7.0203794E-4	45.000004	2
TCGTAAG	20	7.0203794E-4	45.000004	1
CGATGCA	20	7.0203794E-4	45.000004	10
GCTACGC	20	7.0203794E-4	45.000004	16
GACTGCC	20	7.0203794E-4	45.000004	22
GTCATTA	25	3.880111E-5	45.0	9
CTTAAGG	25	3.880111E-5	45.0	2
ACTGCGG	50	2.1827873E-11	45.0	2
CTCGTAC	25	3.880111E-5	45.0	29
AGTATGG	45	3.8198777E-10	45.0	2
ATCCGGG	25	3.880111E-5	45.0	3
TCTCGTA	25	3.880111E-5	45.0	28
TCGTACG	25	3.880111E-5	45.0	30
ACGGTTA	25	3.880111E-5	45.0	34
CGTAAGG	30	2.1571796E-6	44.999996	2
CGATGCG	30	2.1571796E-6	44.999996	10
GTAGGGC	70	0.0	41.785713	4
TGGCTAG	45	1.9157596E-8	40.0	1