SRR3550641_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550641_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	395610
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	1163	0.2939763908900179	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	1155	0.29195419731553807	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	794	0.20070271226713177	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT	600	0.15166451808599377	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	538	0.13599251788377442	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	497	0.12562877581456486	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACCGG	40	6.7957444E-9	45.000004	33
ACTCGCA	20	7.0276705E-4	45.000004	11
CTCGACG	20	7.0276705E-4	45.000004	1
TTTAGCG	50	2.1827873E-11	45.0	1
AATGCGG	35	1.2092278E-7	45.0	2
TAACACG	25	3.886152E-5	45.0	1
CGTAAGG	80	0.0	42.187504	2
GCGTAAG	55	6.002665E-11	40.909092	1
GTAGCGA	45	1.9228537E-8	40.0	29
TTCGGTA	45	1.9228537E-8	40.0	25
CGCACGG	45	1.9228537E-8	40.0	2
TTACGGG	85	0.0	39.705883	3
CATTCGT	40	3.45055E-7	39.375004	39
CATACGA	40	3.45055E-7	39.375004	18
TGTAGCG	40	3.45055E-7	39.375004	1
ATACGAA	40	3.45055E-7	39.375004	19
GTTATAG	40	3.45055E-7	39.375004	1
AGGGTAC	75	0.0	39.0	6
TTAGCGG	105	0.0	38.57143	2
GTCGAAG	35	6.237906E-6	38.571426	1