SRR3550640_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550640_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	597100
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11892	1.9916261932674595	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTC	3264	0.5466421035002512	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTT	2737	0.45838218053927315	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGC	2230	0.37347178027131134	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCG	2215	0.37095963825154915	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCT	1808	0.3027968514486686	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTC	1754	0.2937531401775247	No Hit
GCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	1445	0.2420030145704237	No Hit
CGCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTG	1301	0.21788645118070676	No Hit
CGTCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCT	1182	0.19795679115726011	No Hit
CTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGCT	1083	0.1813766538268297	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCC	944	0.15809747111036676	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTC	914	0.1530731870708424	No Hit
CCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	864	0.1446993803383018	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGT	774	0.12962652821972867	No Hit
GAACTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCT	758	0.1269469100653157	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCG	608	0.10182548986769385	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTC	30	2.1637425E-6	45.000004	5
AGTTACG	30	2.1637425E-6	45.000004	1
TCACGAC	45	3.8380676E-10	45.0	25
GTCGATG	20	7.0305605E-4	45.0	1
ATATGCG	40	6.8048394E-9	45.0	1
CCGGTTG	20	7.0305605E-4	45.0	15
CGGTCTA	45	3.8380676E-10	45.0	31
ACTTTCG	20	7.0305605E-4	45.0	11
TATGTCG	25	3.8885468E-5	45.0	1
GCGTAAG	25	3.8885468E-5	45.0	1
CGTTTTT	5315	0.0	43.518345	1
CTCACGA	55	6.002665E-11	40.90909	24
TGTAGCG	45	1.9255822E-8	40.0	1
AGGGCGC	45	1.9255822E-8	40.0	6
TAATCGT	40	3.4544973E-7	39.375	21
CGGATGG	35	6.2432464E-6	38.57143	2
GCGATCG	35	6.2432464E-6	38.57143	9
TTAACGG	35	6.2432464E-6	38.57143	2
GTTTTTT	6080	0.0	38.11678	2
GCACCGA	65	9.094947E-12	38.076927	9