SRR3550636_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550636_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	647042
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7597	1.1741123451027908	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT	1151	0.17788644322934216	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCT	837	0.12935790876017322	No Hit
CGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTG	799	0.12348502879256679	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC	695	0.10741188361806499	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTA	20	7.030997E-4	45.000004	6
TCACCGA	20	7.030997E-4	45.000004	19
CGACGTA	20	7.030997E-4	45.000004	36
AATTGCG	20	7.030997E-4	45.000004	1
GTATACG	20	7.030997E-4	45.000004	1
AACACGT	40	6.8066583E-9	45.000004	41
ATCGTAG	25	3.88891E-5	45.0	1
TTAGGCG	30	2.1640262E-6	44.999996	1
CGTTTTT	4115	0.0	43.414337	1
TTTAGCG	60	3.6379788E-12	41.249996	1
CGCACGG	50	1.0804797E-9	40.5	2
TATTACG	40	3.4550976E-7	39.375004	1
TAATGCG	40	3.4550976E-7	39.375004	1
CGATAGA	35	6.244054E-6	38.57143	10
TATACGG	65	9.094947E-12	38.07692	2
ACACGCG	125	0.0	37.8	36
TCGATCA	30	1.1393707E-4	37.499996	17
TTAAGCG	30	1.1393707E-4	37.499996	1
TAAGACG	30	1.1393707E-4	37.499996	1
TGCGTAG	60	1.546141E-10	37.499996	1