SRR3550635_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550635_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	592960
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4580	0.7723961144090663	No Hit
GCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	623	0.10506610901241231	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTACG	25	3.8885126E-5	45.000004	1
TCGTTTA	20	7.0305204E-4	45.0	38
CATTACG	20	7.0305204E-4	45.0	2
TTACGTC	20	7.0305204E-4	45.0	24
TAGTACG	20	7.0305204E-4	45.0	1
CGTTTTT	2540	0.0	42.342518	1
CTACGAA	60	3.6379788E-12	41.249996	11
GCTAACG	45	1.9255822E-8	40.000004	1
AATACGG	45	1.9255822E-8	40.000004	2
TGCGAAG	40	3.4544428E-7	39.375	1
TACGTAG	40	3.4544428E-7	39.375	1
TTAACGG	70	0.0	38.571426	2
AACGGGA	240	0.0	38.437496	4
CTAACGG	60	1.546141E-10	37.499996	2
AAATGCG	30	1.1392555E-4	37.499996	1
CACGACC	205	0.0	37.317074	27
TAGGGTA	145	0.0	37.24138	5
CCCCACG	55	2.744855E-9	36.81818	38
ACACGAC	215	0.0	36.62791	26
AGACACG	215	0.0	36.62791	24