SRR3550634_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550634_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	511062
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2040	0.3991687896967491	No Hit
GCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTCTGC	1044	0.2042804982565716	RNA PCR Primer, Index 47 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTCTGC	964	0.18862682022924812	RNA PCR Primer, Index 17 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTCTGCT	878	0.17179911634987535	RNA PCR Primer, Index 17 (96% over 25bp)
GAATCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTC	818	0.16005885782938273	RNA PCR Primer, Index 17 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCG	777	0.15203634784037945	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGC	732	0.14323115395001	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCCGT	25	3.8877537E-5	45.000004	44
TCTACGG	35	1.2101555E-7	45.000004	2
TATACGG	35	1.2101555E-7	45.000004	2
TACGGGT	20	7.0296053E-4	45.0	4
ACGTGCG	20	7.0296053E-4	45.0	1
TCTCGCG	30	2.1631258E-6	44.999996	32
AGTACGG	55	6.002665E-11	40.909092	2
CGGGTAC	50	1.0786607E-9	40.500004	6
CGTTTTT	1185	0.0	39.493668	1
CGAGAGG	75	0.0	39.0	2
ATAGTAG	35	6.24148E-6	38.57143	1
TACCACG	30	1.1390349E-4	37.499996	23
ACGCTAC	30	1.1390349E-4	37.499996	30
GGCCTAT	30	1.1390349E-4	37.499996	8
TAGTACG	30	1.1390349E-4	37.499996	1
CGTATGG	85	0.0	37.058823	2
TTAGCGG	110	0.0	36.81818	2
GCGTTAG	55	2.743036E-9	36.81818	1
TACGGGA	265	0.0	36.509434	4
AACGGGC	105	0.0	36.42857	4