SRR3550626_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550626_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	646988
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG	5430	0.8392736805010295	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC	3862	0.5969198810487985	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC	3705	0.5726535886291555	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2493	0.38532399364439524	No Hit
GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	1441	0.22272437819557703	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAAGCAGT	1263	0.19521227596184165	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTA	985	0.15224393651814253	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCT	963	0.1488435643319505	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	832	0.12859589358689807	No Hit
CTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT	689	0.10649347437664995	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTC	676	0.10448416353935468	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCC	659	0.10185660321366083	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGAGCACCAGTCGAATGC	652	0.10077466660896339	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	25	3.8889077E-5	45.000004	1
CGACGGT	50	2.1827873E-11	45.000004	28
CCGTCGA	90	0.0	45.000004	41
CCCGTCG	100	0.0	45.000004	40
CTTGCGT	25	3.8889077E-5	45.000004	15
GCGATTC	30	2.1640244E-6	45.000004	9
TGTAGCG	45	3.8380676E-10	45.000004	1
CGTCGAA	90	0.0	45.000004	42
CGGTCTA	50	2.1827873E-11	45.000004	31
CCGCGTA	25	3.8889077E-5	45.000004	40
CGGTAGT	100	0.0	45.000004	12
TAGCGCG	35	1.2108285E-7	45.0	1
CCTACCG	20	7.030998E-4	45.0	37
CGTAAGC	55	1.8189894E-12	45.0	43
CCGCATT	20	7.030998E-4	45.0	40
GCCCGTC	20	7.030998E-4	45.0	20
TACCGGT	20	7.030998E-4	45.0	39
CGATGAA	1500	0.0	43.2	19
ACCCGTC	155	0.0	42.09677	39
CGTATGG	75	0.0	42.0	2