SRR3550623_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550623_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1222285
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7078	0.5790793472880711	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	3121	0.25534143019017663	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTC	2882	0.23578788907660653	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCG	2711	0.2217976985727551	No Hit
CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT	2091	0.17107303124884948	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	1870	0.15299214176726375	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGC	1764	0.144319859934467	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCC	1582	0.12942971565551406	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	1325	0.10840352290995962	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	25	3.8909515E-5	45.0	24
CGATTCG	25	3.8909515E-5	45.0	10
TCGTGCG	50	2.1827873E-11	45.0	1
CGTTTTT	4000	0.0	41.456253	1
GCTAGCG	95	0.0	40.26316	1
ACGCCGC	45	1.9284926E-8	40.0	14
TCTAGCG	45	1.9284926E-8	40.0	1
AGTTGCG	45	1.9284926E-8	40.0	1
TATCGCG	45	1.9284926E-8	40.0	1
TCGGTCG	40	3.4584627E-7	39.375	1
TAACGCC	35	6.248614E-6	38.57143	12
CGCACGG	135	0.0	38.333332	2
CTAACGG	65	9.094947E-12	38.07692	2
CGAATAT	130	0.0	38.07692	14
TTTCGCG	30	1.13996444E-4	37.499996	1
CGCGATT	30	1.13996444E-4	37.499996	7
AATAGCG	60	1.5643309E-10	37.499996	1
TAGGGCG	280	0.0	36.964287	5
GCTACGA	135	0.0	36.666664	10
TATACGG	80	0.0	36.5625	2