SRR3550618_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550618_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	643534
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9139	1.4201269862975383	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTT	1147	0.1782345610332943	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTC	949	0.14746695590287381	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCT	897	0.13938657475751087	No Hit
CGCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTG	888	0.13798804725158265	No Hit
CCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	732	0.11374690381549384	No Hit
GCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	694	0.10784200990157475	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGCGT	25	3.8888855E-5	45.0	33
ATTAACG	20	7.0309703E-4	45.0	1
ACTTACG	25	3.8888855E-5	45.0	27
ACGATGT	20	7.0309703E-4	45.0	41
CCCGTAG	20	7.0309703E-4	45.0	40
TTGCGTC	20	7.0309703E-4	45.0	16
GCGATAT	45	3.8380676E-10	45.0	9
AACCTCG	20	7.0309703E-4	45.0	35
TATAGCG	35	1.2108103E-7	45.0	1
ACCCGTA	20	7.0309703E-4	45.0	39
GCGTGAC	20	7.0309703E-4	45.0	36
ATACCCG	25	3.8888855E-5	45.0	37
CGTTTTT	5325	0.0	43.43662	1
AGTACGG	75	0.0	42.0	2
TCGTTAG	40	3.4550612E-7	39.375	1
CTCGTAC	40	3.4550612E-7	39.375	29
TCTCGTA	40	3.4550612E-7	39.375	28
GCGTAAG	35	6.244005E-6	38.571426	1
TGCGTTG	35	6.244005E-6	38.571426	1
CGTTAGG	90	0.0	37.5	2