##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550617_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 426400 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.30762429643527 33.0 31.0 34.0 30.0 34.0 2 32.429971857410884 34.0 31.0 34.0 31.0 34.0 3 32.40341228893058 34.0 31.0 34.0 30.0 34.0 4 35.96269230769231 37.0 35.0 37.0 35.0 37.0 5 36.06000703564728 37.0 35.0 37.0 35.0 37.0 6 36.094242495309565 37.0 36.0 37.0 35.0 37.0 7 36.15958020637899 37.0 37.0 37.0 35.0 37.0 8 36.13475140712946 37.0 37.0 37.0 35.0 37.0 9 37.95664868667917 39.0 38.0 39.0 35.0 39.0 10 37.65842166979362 39.0 37.0 39.0 35.0 39.0 11 37.57598264540338 39.0 37.0 39.0 35.0 39.0 12 37.47106707317073 39.0 37.0 39.0 35.0 39.0 13 37.426435272045026 39.0 37.0 39.0 35.0 39.0 14 38.69828095684803 40.0 38.0 41.0 35.0 41.0 15 38.835234521575984 40.0 38.0 41.0 35.0 41.0 16 38.88188320825516 40.0 38.0 41.0 35.0 41.0 17 38.84591463414634 40.0 38.0 41.0 35.0 41.0 18 38.77812148217636 40.0 38.0 41.0 35.0 41.0 19 38.71601547842401 40.0 38.0 41.0 35.0 41.0 20 38.628445121951216 40.0 38.0 41.0 35.0 41.0 21 38.53996013133208 40.0 38.0 41.0 35.0 41.0 22 38.55004221388368 40.0 38.0 41.0 35.0 41.0 23 38.50712242026266 40.0 37.0 41.0 35.0 41.0 24 38.41604596622889 40.0 37.0 41.0 35.0 41.0 25 38.317108348968105 40.0 37.0 41.0 34.0 41.0 26 38.34025093808631 40.0 37.0 41.0 34.0 41.0 27 38.30022983114446 40.0 37.0 41.0 34.0 41.0 28 38.25310272045028 40.0 37.0 41.0 34.0 41.0 29 38.19070825515947 40.0 37.0 41.0 34.0 41.0 30 38.08736632270169 40.0 36.0 41.0 34.0 41.0 31 38.02463414634146 40.0 36.0 41.0 34.0 41.0 32 37.86507035647279 40.0 36.0 41.0 34.0 41.0 33 37.7562148217636 40.0 36.0 41.0 34.0 41.0 34 37.66897983114446 40.0 36.0 41.0 33.0 41.0 35 37.587706378986866 40.0 36.0 41.0 33.0 41.0 36 37.509500469043154 40.0 36.0 41.0 33.0 41.0 37 37.4125703564728 40.0 35.0 41.0 33.0 41.0 38 37.34762664165103 40.0 35.0 41.0 33.0 41.0 39 37.27772983114446 40.0 35.0 41.0 33.0 41.0 40 37.196536116322704 40.0 35.0 41.0 33.0 41.0 41 37.12809803001876 40.0 35.0 41.0 33.0 41.0 42 37.09631801125703 40.0 35.0 41.0 33.0 41.0 43 37.00566135084428 40.0 35.0 41.0 32.0 41.0 44 36.90216228893058 39.0 35.0 41.0 32.0 41.0 45 36.8225234521576 39.0 35.0 41.0 32.0 41.0 46 36.719444183864915 39.0 35.0 41.0 31.0 41.0 47 36.6868808630394 39.0 35.0 41.0 31.0 41.0 48 36.60709896810506 39.0 35.0 41.0 31.0 41.0 49 36.54218808630394 39.0 35.0 41.0 31.0 41.0 50 36.461036585365854 39.0 35.0 41.0 31.0 41.0 51 35.555548780487804 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 14.0 10 21.0 11 18.0 12 17.0 13 23.0 14 13.0 15 28.0 16 28.0 17 56.0 18 98.0 19 170.0 20 272.0 21 392.0 22 609.0 23 935.0 24 1441.0 25 2321.0 26 3053.0 27 3820.0 28 3856.0 29 4174.0 30 4825.0 31 5944.0 32 7523.0 33 10772.0 34 22766.0 35 33413.0 36 26786.0 37 40821.0 38 75703.0 39 176215.0 40 269.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.30816135084427 21.18996247654784 24.652673545966227 11.84920262664165 2 32.69770168855535 25.337007504690433 25.131097560975608 16.83419324577861 3 33.27321763602251 23.540337711069416 26.596153846153847 16.590290806754222 4 29.570356472795496 25.690196998123827 26.356941838649156 18.38250469043152 5 25.731472795497183 31.07129455909944 24.239446529080674 18.9577861163227 6 26.415103189493433 35.585131332082554 23.733348968105066 14.26641651031895 7 78.92002814258912 7.405253283302065 8.957786116322701 4.7169324577861165 8 78.61444652908067 7.775093808630394 9.027204502814259 4.583255159474672 9 71.94465290806754 10.449812382739212 11.306988742964352 6.298545966228892 10 40.38696060037523 27.57621951219512 18.400797373358348 13.636022514071295 11 30.790572232645403 26.151969981238278 24.374765478424017 18.68269230769231 12 29.74906191369606 23.899155722326455 27.490853658536587 18.8609287054409 13 25.04268292682927 26.582786116322705 28.17354596622889 20.200984990619137 14 19.97795497185741 29.225844277673545 29.102720450281428 21.693480300187616 15 20.66627579737336 27.238039399624764 32.245544090056285 19.850140712945592 16 22.275093808630395 26.575046904315197 31.098968105065666 20.050891181988742 17 22.780253283302063 26.71810506566604 28.081613508442775 22.420028142589118 18 22.673076923076923 27.59169793621013 28.38391181988743 21.351313320825515 19 25.096388367729833 27.143996247654783 26.77016885553471 20.989446529080674 20 25.545966228893057 27.63391181988743 27.971153846153847 18.848968105065666 21 24.753986866791745 27.70544090056285 27.705909943714822 19.83466228893058 22 23.49718574108818 26.396810506566602 27.160178236397748 22.94582551594747 23 23.75656660412758 26.48030018761726 28.45075046904315 21.31238273921201 24 23.136022514071293 26.530018761726076 28.654549718574106 21.679409005628518 25 22.257973733583487 28.36421200750469 27.553939962476548 21.82387429643527 26 21.375703564727957 30.238273921200747 26.921904315196997 21.464118198874296 27 22.625 28.133208255159474 28.886022514071296 20.35576923076923 28 20.805347091932457 28.498358348968107 29.063320825515948 21.63297373358349 29 21.6156191369606 27.757035647279547 28.907598499061915 21.719746716697934 30 21.532129455909942 29.52673545966229 26.95966228893058 21.981472795497186 31 24.11608818011257 28.938086303939965 25.46669793621013 21.479127579737337 32 23.073170731707318 29.59803001876173 26.039634146341463 21.289165103189493 33 22.371951219512194 29.88625703564728 25.90126641651032 21.84052532833021 34 21.039165103189493 28.986397748592868 26.919793621013135 23.0546435272045 35 22.862570356472794 27.95262664165103 26.193714821763603 22.99108818011257 36 22.55300187617261 30.544090056285178 25.400562851782365 21.50234521575985 37 23.245544090056285 29.597560975609756 26.776266416510317 20.38062851782364 38 21.9359756097561 28.70239212007505 26.578095684803 22.783536585365855 39 23.02767354596623 27.24765478424015 27.489915572232643 22.234756097560975 40 22.772279549718576 27.460834896810503 27.450046904315194 22.316838649155724 41 20.72701688555347 27.233348968105066 27.45075046904315 24.588883677298313 42 21.787523452157597 27.552298311444652 27.185975609756095 23.474202626641652 43 23.78048780487805 26.842166979362105 27.62359287054409 21.75375234521576 44 22.034474671669795 28.10530018761726 26.625703564727953 23.23452157598499 45 21.82715759849906 28.33231707317073 25.862804878048777 23.977720450281424 46 21.515712945590995 29.21904315196998 25.99155722326454 23.273686679174485 47 22.402439024390244 26.829033771106943 28.532129455909942 22.23639774859287 48 21.645872420262663 26.702392120075046 28.114446529080677 23.537288930581614 49 21.484287054409005 27.03517823639775 28.634146341463413 22.84638836772983 50 20.10389305816135 26.939024390243905 29.060741088180116 23.896341463414632 51 20.359990619136962 26.618198874296432 27.288227016885553 25.73358348968105 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 421.0 1 852.5 2 1284.0 3 2095.5 4 2907.0 5 2140.0 6 1373.0 7 1322.0 8 1271.0 9 1277.0 10 1283.0 11 1354.0 12 1425.0 13 1393.0 14 1361.0 15 1399.0 16 1437.0 17 1329.5 18 1222.0 19 1222.5 20 1223.0 21 1468.0 22 1713.0 23 1961.5 24 2210.0 25 2901.5 26 4383.5 27 5174.0 28 5931.0 29 6688.0 30 7771.5 31 8855.0 32 10367.5 33 11880.0 34 12336.0 35 12792.0 36 13551.5 37 14311.0 38 15342.0 39 16373.0 40 18705.0 41 21037.0 42 23179.5 43 25322.0 44 26926.0 45 28530.0 46 30451.0 47 32372.0 48 33669.5 49 34967.0 50 34256.0 51 33545.0 52 29941.5 53 26338.0 54 24263.5 55 22189.0 56 21262.0 57 20335.0 58 19263.0 59 18191.0 60 17879.0 61 17567.0 62 16167.0 63 14767.0 64 12624.0 65 10481.0 66 8890.5 67 7300.0 68 6265.0 69 5230.0 70 4717.0 71 4204.0 72 3254.0 73 2304.0 74 1857.0 75 1028.0 76 646.0 77 554.5 78 463.0 79 339.0 80 215.0 81 158.0 82 101.0 83 86.0 84 71.0 85 39.0 86 7.0 87 6.5 88 6.0 89 4.5 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 426400.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.21575443297421 #Duplication Level Percentage of deduplicated Percentage of total 1 73.37923847564743 20.70450573307521 2 8.531202207384723 4.814286130032297 3 2.921491021493746 2.4729621972181954 4 1.5676974642766826 1.7693506670890893 5 1.04149879204229 1.4693337079252264 6 0.8811570061555826 1.49175058215484 7 0.7245139258708009 1.4309894910948417 8 0.6595439888094674 1.4887624980793779 9 0.6029137354436687 1.531049931319116 >10 9.516698068459686 56.421561216122655 >50 0.12491290508319436 2.2824738775161295 >100 0.039972129626622194 2.144313012786926 >500 0.007494774304991661 1.4325965854659093 >1k 0.001665505401109258 0.5460643701201859 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1256 0.29455909943714825 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1068 0.25046904315197 No Hit GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC 878 0.20590994371482177 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCC 758 0.17776735459662288 No Hit CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT 717 0.16815196998123827 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 698 0.16369606003752346 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 653 0.1531425891181989 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 639 0.149859287054409 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 631 0.1479831144465291 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 622 0.14587242026266417 No Hit GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA 501 0.1174953095684803 No Hit CCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC 499 0.11702626641651032 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.035647279549719E-4 0.0 0.0 0.174718574108818 0.0 2 7.035647279549719E-4 0.0 0.0 0.650328330206379 0.0 3 7.035647279549719E-4 0.0 0.0 0.8878986866791745 0.0 4 7.035647279549719E-4 0.0 0.0 1.202861163227017 0.0 5 7.035647279549719E-4 0.0 0.0 2.050656660412758 0.0 6 7.035647279549719E-4 0.0 0.0 2.50234521575985 0.0 7 7.035647279549719E-4 0.0 0.0 2.9685741088180113 0.0 8 7.035647279549719E-4 0.0 0.0 3.648921200750469 0.0 9 7.035647279549719E-4 0.0 0.0 3.9392589118198873 0.0 10 7.035647279549719E-4 0.0 0.0 4.570356472795497 0.0 11 7.035647279549719E-4 0.0 0.0 5.62640712945591 0.0 12 7.035647279549719E-4 0.0 0.0 6.339118198874297 0.0 13 7.035647279549719E-4 0.0 0.0 6.626172607879925 0.0 14 7.035647279549719E-4 0.0 0.0 6.764305816135084 0.0 15 7.035647279549719E-4 0.0 0.0 7.0403377110694185 0.0 16 7.035647279549719E-4 0.0 0.0 7.568714821763602 0.0 17 9.380863039399625E-4 0.0 0.0 8.137664165103189 0.0 18 9.380863039399625E-4 0.0 0.0 8.762429643527204 0.0 19 9.380863039399625E-4 0.0 0.0 9.144934333958725 0.0 20 9.380863039399625E-4 0.0 0.0 9.533536585365853 0.0 21 9.380863039399625E-4 0.0 0.0 10.02110694183865 0.0 22 9.380863039399625E-4 0.0 0.0 10.51078799249531 0.0 23 9.380863039399625E-4 0.0 0.0 10.972091932457786 0.0 24 9.380863039399625E-4 0.0 0.0 11.35483114446529 0.0 25 9.380863039399625E-4 0.0 0.0 11.717870544090056 0.0 26 9.380863039399625E-4 0.0 0.0 12.041275797373359 0.0 27 9.380863039399625E-4 0.0 0.0 12.345215759849907 0.0 28 9.380863039399625E-4 0.0 0.0 12.677298311444654 0.0 29 9.380863039399625E-4 0.0 0.0 13.022045028142589 0.0 30 9.380863039399625E-4 0.0 0.0 13.38625703564728 0.0 31 9.380863039399625E-4 0.0 0.0 13.74484052532833 0.0 32 0.0011726078799249532 0.0 0.0 14.104127579737336 0.0 33 0.0014071294559099437 0.0 0.0 14.435506566604127 0.0 34 0.0014071294559099437 0.0 0.0 14.788461538461538 0.0 35 0.0014071294559099437 0.0 0.0 15.130863039399625 0.0 36 0.0014071294559099437 0.0 0.0 15.483818011257036 0.0 37 0.0014071294559099437 0.0 0.0 15.807223264540339 0.0 38 0.0014071294559099437 0.0 0.0 16.163227016885553 0.0 39 0.0014071294559099437 0.0 0.0 16.535412757973734 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAC 20 7.0282904E-4 45.0 6 ACCGGGT 20 7.0282904E-4 45.0 4 TTGTCGC 40 6.7975634E-9 45.0 38 ATTCGCG 20 7.0282904E-4 45.0 1 TACGCGG 20 7.0282904E-4 45.0 2 TTACGCG 20 7.0282904E-4 45.0 1 TGTCGCA 35 1.2095188E-7 45.0 39 TGCAACG 25 3.8866645E-5 45.0 1 AGTATCA 30 2.1622782E-6 44.999996 32 CGTTAGG 30 2.1622782E-6 44.999996 2 GCTTTCG 30 2.1622782E-6 44.999996 10 CGGGTCA 55 6.002665E-11 40.909092 6 ATTGCGG 50 1.0786607E-9 40.5 2 TGCTACG 40 3.451405E-7 39.375 1 GACGAGT 35 6.23905E-6 38.571426 44 AATACGG 35 6.23905E-6 38.571426 2 TAGGGAC 205 0.0 38.414635 5 CTACGAA 125 0.0 37.800003 11 TACGAAT 125 0.0 37.800003 12 GCTACGA 125 0.0 37.800003 10 >>END_MODULE