SRR3550612_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550612_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	517654
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCG	2486	0.48024356037044047	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2359	0.45570979843679366	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGC	1978	0.3821085126358533	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTC	1971	0.38075625804108537	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1157	0.22350836659235707	No Hit
GCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	1133	0.2188720651245813	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	909	0.17559991809200742	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	852	0.16458870210603996	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	759	0.1466230339184088	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	749	0.14469124164016892	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	740	0.142952628589753	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCC	659	0.12730511113600976	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	645	0.1246006019464739	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCT	544	0.10508949993625084	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	541	0.10450996225277889	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCCC	20	7.029691E-4	45.0	10
ACACGGC	20	7.029691E-4	45.0	14
ACGTTAG	20	7.029691E-4	45.0	1
ACGGCAA	20	7.029691E-4	45.0	31
GCTTACG	25	3.8878243E-5	45.0	1
TTAACGG	20	7.029691E-4	45.0	2
CGGTATT	20	7.029691E-4	45.0	43
CCTATTG	20	7.029691E-4	45.0	4
CAATCGA	25	3.8878243E-5	45.0	41
AACACGT	20	7.029691E-4	45.0	41
ACGAACG	25	3.8878243E-5	45.0	1
GCGATTC	30	2.1631822E-6	44.999996	9
TCGACGG	30	2.1631822E-6	44.999996	2
CTACGAA	155	0.0	43.548386	11
CGAATAT	155	0.0	43.548386	14
GCTACGA	155	0.0	42.09677	10
CGAATGC	65	0.0	41.538464	45
GCGATTA	60	3.6379788E-12	41.249996	9
TTGAGCG	50	1.0786607E-9	40.5	1
AATATAC	170	0.0	39.705883	16