SRR3550603_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550603_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	516911
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5375	1.0398308412860242	No Hit
GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	1212	0.23446976365370442	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCC	1147	0.22189506510791993	No Hit
CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT	906	0.17527195203816517	TruSeq Adapter, Index 15 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	647	0.12516661475573165	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT	646	0.12497315785502726	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTC	551	0.1065947522881115	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCG	20	7.0296804E-4	45.0	21
TAGACGT	20	7.0296804E-4	45.0	1
ATTACGG	20	7.0296804E-4	45.0	2
TTGTCGT	25	3.887817E-5	45.0	12
TGTTACG	20	7.0296804E-4	45.0	1
CGGTACA	20	7.0296804E-4	45.0	6
TAAGACG	20	7.0296804E-4	45.0	1
GCGTATG	20	7.0296804E-4	45.0	1
CGTTTTT	3820	0.0	42.70288	1
ATTAGCG	50	1.0786607E-9	40.5	1
CTCACGA	45	1.9248546E-8	40.0	24
TCGGGCA	45	1.9248546E-8	40.0	5
CGACGGT	40	3.4532968E-7	39.375	28
TTCACGG	40	3.4532968E-7	39.375	2
TTAACGG	40	3.4532968E-7	39.375	2
CGGTCTA	40	3.4532968E-7	39.375	31
TAGGGTC	75	0.0	39.0	5
TATCGGG	35	6.2416184E-6	38.57143	3
ATCGCCA	35	6.2416184E-6	38.57143	24
TACACGG	35	6.2416184E-6	38.57143	2