SRR3550599_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550599_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	652050
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2793	0.42834138486312395	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTC	2587	0.39674871558929525	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCG	2297	0.35227359865041025	No Hit
GCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	1558	0.23893873169235488	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGC	1416	0.21716126063952151	No Hit
CCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	1133	0.17375968100605782	Illumina Single End Adapter 2 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTT	1110	0.17023234414538763	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	907	0.1390997622881681	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	784	0.1202361782071927	No Hit
CTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGCT	780	0.1196227283183805	Illumina Single End Adapter 2 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAT	65	0.0	45.000004	43
TAACGCC	30	2.1640517E-6	45.000004	12
ATAACGC	30	2.1640517E-6	45.000004	11
TCGTAAG	20	7.0310384E-4	45.0	1
TACCGTT	25	3.8889422E-5	45.0	14
GGTCGAA	70	0.0	41.785713	42
TATACGG	45	1.9261279E-8	40.0	2
TGCGTAG	45	1.9261279E-8	40.0	1
CGATGAA	485	0.0	39.896908	19
TGCGCGT	40	3.4551522E-7	39.375	37
TGTAACG	40	3.4551522E-7	39.375	1
CTTGCGT	35	6.2441304E-6	38.571426	15
CCGATGA	485	0.0	38.041237	18
GGCGATA	245	0.0	37.65306	8
GTCGATG	30	1.1393802E-4	37.500004	1
CGTAAGG	120	0.0	37.500004	2
TATAGCG	30	1.1393802E-4	37.500004	1
ACCGTTC	30	1.1393802E-4	37.500004	15
GCGATAT	90	0.0	37.5	9
CACGACG	55	2.744855E-9	36.81818	26