SRR3550597_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550597_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	882587
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCG	18891	2.140412219985112	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC	14201	1.6090198473351636	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGC	11394	1.2909775466894482	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	5702	0.6460552897334767	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4617	0.5231212333741603	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCT	4195	0.47530725016343994	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	3306	0.37458063624322585	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCT	2963	0.3357176119747968	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTA	2653	0.30059359587213497	No Hit
CTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGCT	2630	0.297987620483873	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTCCCTT	2563	0.290396300874588	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTC	2169	0.24575480944088232	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCC	1459	0.16530948223801167	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	1062	0.12032808097105442	No Hit
ACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	1045	0.11840192524929553	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTT	909	0.10299267947522453	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	889	0.1007266139202141	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACAT	20	7.0323946E-4	45.000004	36
GCGAACT	20	7.0323946E-4	45.000004	26
ATTACGG	20	7.0323946E-4	45.000004	2
TGGCGAA	20	7.0323946E-4	45.000004	24
CGACAAT	25	3.8900664E-5	45.000004	20
TCTAGCG	25	3.8900664E-5	45.000004	1
ATCCGTC	20	7.0323946E-4	45.000004	27
TCCGTCA	20	7.0323946E-4	45.000004	28
ACGTCGT	40	6.8121153E-9	45.000004	22
CCACGTC	25	3.8900664E-5	45.000004	33
TACACCG	20	7.0323946E-4	45.000004	25
TCGCGCG	25	3.8900664E-5	45.000004	1
CGAATAT	110	0.0	42.954544	14
ACGGGCG	95	0.0	42.63158	5
CGCATCG	75	0.0	42.0	21
GCGATTC	55	6.002665E-11	40.90909	9
TACGGCT	1410	0.0	40.851067	7
CTCGAAT	105	0.0	40.714287	43
TGCGTAG	50	1.0804797E-9	40.500004	1
CGATGAA	1225	0.0	40.40816	19