SRR3550596_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550596_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	743117
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15650	2.105994076302924	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCC	2414	0.3248479041658312	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT	1544	0.20777347308701052	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTC	1393	0.18745365803769798	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTT	1344	0.18085981077004024	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGT	1193	0.1605399957207277	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG	1103	0.14842884767809106	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTC	964	0.12972385236779674	No Hit
CCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	964	0.12972385236779674	No Hit
GCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	946	0.1273016227592694	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC	826	0.11115342536908723	No Hit
CTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT	802	0.10792378589105081	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	30	2.164461E-6	45.000004	21
CGGTCTA	30	2.164461E-6	45.000004	31
ATAACGC	35	1.2111559E-7	45.000004	11
TCGATTG	20	7.0316764E-4	45.0	1
TCTAGCG	20	7.0316764E-4	45.0	1
TCGCTAG	20	7.0316764E-4	45.0	1
CGGTACC	25	3.88947E-5	45.0	21
CCACGAA	20	7.0316764E-4	45.0	10
TGCGTAG	45	3.8380676E-10	45.0	1
GTACGAG	25	3.88947E-5	45.0	1
CGTTTTT	7605	0.0	43.66864	1
CGGGTAC	85	0.0	42.35294	6
ACGGGTC	65	0.0	41.53846	5
AGCGACT	170	0.0	41.02941	19
ACGCGAG	40	3.4560253E-7	39.375	1
CGCGAGG	80	0.0	39.375	2
TAACGCC	40	3.4560253E-7	39.375	12
ACGTAGG	75	0.0	39.0	2
AACGAGC	180	0.0	38.75	15
TCACGAC	35	6.2453073E-6	38.57143	25