SRR3550590_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550590_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1391443
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC	12294	0.883543199398035	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12025	0.8642107509973459	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG	9929	0.7135757627153969	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC	6685	0.4804364965003956	No Hit
GCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	4129	0.29674230277488906	No Hit
GAACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCT	3240	0.23285179486331817	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCT	2276	0.1635711991076889	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCC	1956	0.14057349097304023	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1940	0.13942360556630778	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTC	1713	0.12310960635829135	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTA	1486	0.10679560715027493	No Hit
CTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGCT	1457	0.1047114398505724	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGT	20	7.0337986E-4	45.000004	14
CGTAAGG	160	0.0	45.000004	2
CGCCGAT	20	7.0337986E-4	45.000004	31
ATCGCGC	20	7.0337986E-4	45.000004	44
CGGTCTA	130	0.0	43.26923	31
CGTTTTT	5980	0.0	42.328594	1
CGACGGT	135	0.0	41.666664	28
TAGCCGT	60	3.6379788E-12	41.250004	44
CGATCGA	140	0.0	40.17857	41
CGATGAA	1340	0.0	39.96269	19
TGCGTAG	115	0.0	39.130436	1
TACGGCT	840	0.0	38.839287	7
CTCCGAT	35	6.249238E-6	38.571426	38
CTAAACG	35	6.249238E-6	38.571426	1
CTCGAAT	100	0.0	38.250004	43
CCGATGA	1345	0.0	38.141266	18
CGCATCG	65	9.094947E-12	38.07692	21
GCCGCAT	65	9.094947E-12	38.07692	19
ATTACGG	95	0.0	37.894737	2
GCGAGAC	60	1.5643309E-10	37.500004	21