SRR3550580_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550580_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	686786
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCG	4348	0.6330938603873695	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4249	0.6186788897851733	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGC	4198	0.6112529958385873	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTC	4113	0.5988765059276107	No Hit
GCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC	2003	0.291648344608073	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1813	0.2639832495129487	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCC	1406	0.20472170370391943	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1294	0.18841385817416198	No Hit
CCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC	1134	0.16511693598879418	No Hit
CTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGCT	1079	0.157108618987574	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	991	0.14429531178562172	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	977	0.14225683109440204	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCT	854	0.12434732216440056	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	832	0.12114399536391249	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	809	0.11779506279976587	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACAACCATCGTA	801	0.11663021669049747	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACAACCAT	733	0.10672902476171617	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCC	20	7.031301E-4	45.0	19
CGATTCG	20	7.031301E-4	45.0	10
CTAAGCG	25	3.889161E-5	45.0	1
CGTTATG	25	3.889161E-5	45.0	11
CTTGCGT	25	3.889161E-5	45.0	15
ACATGCG	20	7.031301E-4	45.0	1
CATCGAA	45	3.8380676E-10	45.0	42
CGGTCTA	40	6.8084773E-9	45.0	31
CGTCACG	25	3.889161E-5	45.0	36
ATACCGG	20	7.031301E-4	45.0	2
GCGACTA	30	2.1642209E-6	44.999996	1
CCGATGA	445	0.0	40.95506	18
TACGGGT	55	6.002665E-11	40.909092	4
CGTTTTT	2320	0.0	40.73276	1
CGCATCG	50	1.0804797E-9	40.5	21
ACGCTAG	50	1.0804797E-9	40.5	1
ATTGGGC	100	0.0	40.5	4
CGATGAA	485	0.0	40.360825	19
GGTATGC	145	0.0	40.34483	8
ACGGGTA	95	0.0	40.26316	5