SRR3550569_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550569_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	635748
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4298	0.6760540339883098	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCC	1833	0.2883217878782159	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	1420	0.22335894096402975	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	944	0.14848650723242543	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	854	0.13432995463611366	No Hit
CTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGCT	750	0.11797127163593123	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	30	2.1639644E-6	45.000004	1
GCGCGAC	30	2.1639644E-6	45.000004	9
TGCAACG	35	1.2107739E-7	45.000004	1
CGTATGG	55	1.8189894E-12	45.0	2
CGACGGT	40	6.8066583E-9	45.0	28
CGCATAC	25	3.888832E-5	45.0	26
GCGCTTA	20	7.030905E-4	45.0	1
TGTCGCG	25	3.888832E-5	45.0	1
TCGCGAG	25	3.888832E-5	45.0	1
AATCGCG	20	7.030905E-4	45.0	1
CGTTTTT	2340	0.0	42.980766	1
GCTACGA	105	0.0	42.857147	10
CGCACGG	70	0.0	41.785717	2
CGGGTCC	45	1.925946E-8	40.0	6
CGGGTAT	45	1.925946E-8	40.0	6
ACGATAG	45	1.925946E-8	40.0	1
ACGGTCT	45	1.925946E-8	40.0	30
GCGAGAC	40	3.4549703E-7	39.375	21
ACACGAC	40	3.4549703E-7	39.375	26
CACGACC	40	3.4549703E-7	39.375	27