SRR3550566_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550566_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1116258
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19240	1.7236158665828152	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTC	3798	0.34024392210402976	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCG	2146	0.19224946204192936	No Hit
GCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	2102	0.18830772097490006	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTT	1772	0.15874466297218026	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCT	1667	0.14933823542586033	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCC	1426	0.12774824458144982	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGC	1425	0.12765865955719913	No Hit
GAACTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCT	1245	0.11153335519207926	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1224	0.10965206968281527	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTC	1152	0.1032019479367673	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCGA	20	7.033198E-4	45.000004	28
TAACGCC	20	7.033198E-4	45.000004	12
TATTGCG	20	7.033198E-4	45.000004	1
ACTACGC	20	7.033198E-4	45.000004	1
ACTCGTA	25	3.8907332E-5	45.0	12
CGAATAT	185	0.0	43.783783	14
CGTTTTT	9830	0.0	43.71821	1
TTTGCGC	230	0.0	41.086956	13
GTATACG	55	6.184564E-11	40.909092	1
TACGAAT	210	0.0	40.714287	12
CGTAAGG	140	0.0	40.17857	2
GACACGA	85	0.0	39.705883	25
CTACGAA	210	0.0	39.642857	11
TCGCATG	40	3.458099E-7	39.375004	1
TAGCCGT	195	0.0	39.230766	44
AACACGT	65	9.094947E-12	38.076927	41
CTTGCGG	185	0.0	37.7027	2
CACGACC	90	0.0	37.5	27
CGGTCTA	90	0.0	37.5	31
GCCGATA	60	1.5643309E-10	37.499996	9