SRR3550563_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550563_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	784331
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8754	1.1161104176680507	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTT	2083	0.2655766506742689	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCT	1408	0.17951604615908334	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTC	1394	0.17773108547284247	No Hit
CGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTG	951	0.12124982947250586	No Hit
CGTCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCT	942	0.12010235474563671	No Hit
CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGCT	861	0.10977508220381446	No Hit
CCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	844	0.10760762994195053	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCC	807	0.10289023384259961	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	25	3.889668E-5	45.0	1
TAGCCGT	45	3.8380676E-10	45.0	44
TATTGCG	55	1.8189894E-12	45.0	1
ACGTACG	20	7.031915E-4	45.0	1
CGTTTTT	4690	0.0	42.60128	1
TCTAGCG	40	3.4563527E-7	39.375	1
GTATGCG	40	3.4563527E-7	39.375	1
GTACGAG	75	0.0	39.000004	1
GGCGATA	260	0.0	38.942307	8
TCACGAC	35	6.245751E-6	38.571426	25
GTATACG	35	6.245751E-6	38.571426	1
AATAGCG	65	9.094947E-12	38.07692	1
ACGTTCG	30	1.13959104E-4	37.500004	13
GCGGTAT	30	1.13959104E-4	37.500004	5
TCGATGG	60	1.546141E-10	37.500004	2
GCTTGCG	60	1.546141E-10	37.500004	1
CGGTCTA	30	1.13959104E-4	37.500004	31
CGCCGGT	60	1.546141E-10	37.500004	28
TTCGAAT	30	1.13959104E-4	37.500004	16
TATGCGG	115	0.0	37.173916	2