SRR3550560_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550560_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	595269
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3066	0.5150612580194837	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	728	0.12229765030599611	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	120	0.0	44.999996	14
CGTCATA	30	2.1637316E-6	44.999996	38
GTATGCG	50	1.0804797E-9	40.500004	1
CATCGTT	50	1.0804797E-9	40.500004	36
CGTTTTT	1740	0.0	40.344826	1
GCTACGA	135	0.0	40.000004	10
TTACGTA	45	1.9255822E-8	40.0	45
TGTTGCG	35	6.2432155E-6	38.571426	1
GACCTAT	130	0.0	38.076927	33
TACGAAT	160	0.0	37.96875	12
GGCGATA	190	0.0	37.894737	8
CTAACGG	60	1.546141E-10	37.499996	2
ATAACGG	30	1.1392608E-4	37.499996	2
AATAGGC	30	1.1392608E-4	37.499996	45
ATCGCAT	30	1.1392608E-4	37.499996	36
CCCGCGA	30	1.1392608E-4	37.499996	28
AATATAC	145	0.0	37.24138	16
CTACGAA	145	0.0	37.24138	11
CGCATGG	115	0.0	37.173912	2
GCCGCAT	55	2.744855E-9	36.81818	19