SRR3550557_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550557_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	543634
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1794	0.3300014347888469	No Hit
CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	1455	0.26764330413476717	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	1202	0.22110464025428875	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT	1107	0.2036296478881012	Illumina Single End Adapter 2 (95% over 22bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	778	0.14311099011467274	No Hit
TCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	686	0.1261878396126806	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG	672	0.12361257757976873	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCC	631	0.11607073876909832	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCCGT	30	2.1633823E-6	45.000004	44
ATTAGCG	35	1.2103555E-7	45.0	1
GCGAAAA	25	3.8880833E-5	45.0	1
TAAACGG	35	1.2103555E-7	45.0	2
TACGGGT	35	1.2103555E-7	45.0	4
ACTAGCG	20	7.030002E-4	45.0	1
CGAGGCG	20	7.030002E-4	45.0	18
TCTAACG	25	3.8880833E-5	45.0	28
TATTACG	25	3.8880833E-5	45.0	1
ACGCTTA	20	7.030002E-4	45.0	23
TATAGCG	25	3.8880833E-5	45.0	1
CGGTCTA	80	0.0	45.0	31
CGTCATA	25	3.8880833E-5	45.0	38
CGACGGT	90	0.0	42.5	28
ACGGTCT	85	0.0	42.35294	30
TAAGTAG	65	0.0	41.53846	1
CGTTTTT	1175	0.0	41.170216	1
ATTACGG	55	6.002665E-11	40.909092	2
AGGGCGT	55	6.002665E-11	40.909092	6
TCACGAC	100	0.0	40.5	25