SRR3550553_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550553_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	431375
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCG	2512	0.582323964068386	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC	2417	0.56030136192408	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGC	2219	0.5144016227180528	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1061	0.24595769342219648	No Hit
GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	907	0.21025789626195304	Illumina Single End Adapter 2 (95% over 21bp)
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	581	0.13468559837728195	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCT	516	0.11961750217328311	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCT	485	0.11243117936829905	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	433	0.10037670240509997	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATGG	30	2.1623364E-6	45.000004	2
AAGTACG	25	3.8867394E-5	45.0	1
CGAACTA	20	7.028382E-4	45.0	19
ATAGCGG	20	7.028382E-4	45.0	2
GCGATAT	35	1.2095734E-7	45.0	9
ATAACGG	25	3.8867394E-5	45.0	2
TGTAACG	20	7.028382E-4	45.0	14
GTAACGA	20	7.028382E-4	45.0	15
TGCGTAG	35	1.2095734E-7	45.0	1
CGGTCTA	40	3.4515324E-7	39.375	31
ATGTAGG	110	0.0	38.863636	2
CAACGTT	35	6.2392173E-6	38.571426	18
ACTTACG	35	6.2392173E-6	38.571426	1
GTAACGG	35	6.2392173E-6	38.571426	2
CGGGACG	65	9.094947E-12	38.076927	6
TACGGCT	190	0.0	37.894737	7
CCGATAG	30	1.1387396E-4	37.500004	11
ATTCCCG	30	1.1387396E-4	37.500004	12
TCTACGG	30	1.1387396E-4	37.500004	2
GGTATTC	30	1.1387396E-4	37.500004	8