SRR3550551_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550551_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	325049
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGC	808	0.24857790671560287	TruSeq Adapter, Index 20 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGC	763	0.23473384012871906	TruSeq Adapter, Index 20 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGCT	611	0.18797165965746704	TruSeq Adapter, Index 22 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	486	0.1495159191383453	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	385	0.11844368079889493	No Hit
TCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGC	383	0.117828388950589	TruSeq Adapter, Index 20 (95% over 21bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	362	0.11136782454337654	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGA	30	2.1606793E-6	45.000004	24
TCGTTAG	20	7.0258114E-4	45.000004	1
CCGATGA	25	3.8846105E-5	45.000004	18
GAGTACG	20	7.0258114E-4	45.000004	1
GCCATTA	20	7.0258114E-4	45.000004	10
CGTTACT	20	7.0258114E-4	45.000004	29
TAGCAGT	20	7.0258114E-4	45.000004	14
TTAAGCG	35	1.2083365E-7	45.000004	1
TGCTCGC	20	7.0258114E-4	45.000004	23
CACGTCG	25	3.8846105E-5	45.000004	41
AATAGCG	20	7.0258114E-4	45.000004	1
AACTAAC	35	1.2083365E-7	45.000004	13
TCAACGG	20	7.0258114E-4	45.000004	2
TGCGTAG	20	7.0258114E-4	45.000004	1
TTGCGAG	45	3.8380676E-10	45.0	1
ACAACGA	90	0.0	42.5	13
CACAACG	90	0.0	42.5	12
ACACAAC	100	0.0	40.500004	11
CAACGAG	95	0.0	40.263153	14
TACGGGA	90	0.0	40.0	4