SRR3550545_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550545_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	595486
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9656	1.6215326640760654	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTT	3044	0.5111791041267133	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC	2076	0.34862280557393455	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCT	1977	0.3319977295855822	No Hit
CGTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCT	1297	0.2178052884534649	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTG	986	0.16557903964157006	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTC	904	0.15180877468152065	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCC	771	0.1294740766365624	No Hit
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	749	0.12577961530581744	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	746	0.1252758251243522	No Hit
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	695	0.1167113920394434	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGT	650	0.10915453931746506	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGG	20	7.030544E-4	45.000004	2
TGTTGCG	40	6.8048394E-9	45.000004	1
ACGTCGC	20	7.030544E-4	45.000004	20
CGTCGCT	20	7.030544E-4	45.000004	21
CGATAGA	20	7.030544E-4	45.000004	10
TAGTACG	20	7.030544E-4	45.000004	1
CGAACGG	55	1.8189894E-12	45.0	2
CGTTTTT	6230	0.0	44.13323	1
AGTACGG	75	0.0	42.0	2
CGTTTCT	300	0.0	41.25	1
CGACAGG	50	1.0804797E-9	40.499996	2
CGGTCTA	50	1.0804797E-9	40.499996	31
CGTTTTC	245	0.0	40.408165	1
TTACGAG	45	1.9255822E-8	40.0	1
GCTACGA	90	0.0	40.0	10
TGCGTAG	45	1.9255822E-8	40.0	1
GCGAACG	40	3.4544792E-7	39.375004	1
GTTAGCG	35	6.2432173E-6	38.571426	1
CGTTCTG	335	0.0	38.283585	1
GTTTTTT	7320	0.0	38.02254	2