SRR3550544_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550544_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	625856
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7868	1.2571581961345741	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	4449	0.7108663973821454	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTT	2513	0.4015300644237652	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG	2276	0.36366192862255853	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	2088	0.3336230698435423	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGC	1910	0.30518202270170774	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTG	1782	0.28473003374578176	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	1633	0.2609226403517742	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCT	1497	0.23919240208610287	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT	1426	0.22784793946211268	No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	1251	0.19988623581143264	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT	1169	0.1867841803865426	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCC	880	0.140607424071991	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTT	791	0.1263869005010737	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT	788	0.1259075570099192	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTC	728	0.1163206871868289	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	45	3.8380676E-10	45.0	25
TTAGCCG	25	3.8887625E-5	45.0	37
CACGACC	70	0.0	45.0	27
TAGCACG	40	6.8066583E-9	45.0	1
CGTTTTT	4530	0.0	43.460266	1
ACACGAC	75	0.0	42.000004	26
CACAACG	155	0.0	40.645164	12
CGACGGT	50	1.0804797E-9	40.5	28
ACGGGTA	50	1.0804797E-9	40.5	5
CGTTCTG	285	0.0	40.263157	1
GCGTGAG	45	1.925946E-8	40.0	1
CGCATGG	85	0.0	39.705883	2
CGTGGCG	115	0.0	39.130436	27
GTGGCGA	115	0.0	39.130436	28
GCGAGAC	75	0.0	39.000004	21
TTACGCG	35	6.2437284E-6	38.571426	1
CGCACGG	35	6.2437284E-6	38.571426	2
TCGACGG	35	6.2437284E-6	38.571426	2
CAACGAG	165	0.0	38.181816	14
CGTTTCT	220	0.0	37.840908	1