SRR3550541_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550541_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	341168
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	695	0.2037119542278291	No Hit
GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	571	0.1673662242648783	TruSeq Adapter, Index 14 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTC	504	0.14772780565586457	No Hit
CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	479	0.14040003751817287	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT	409	0.11988228673263611	TruSeq Adapter, Index 15 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	20	7.0263044E-4	45.000004	6
GATCGAC	20	7.0263044E-4	45.000004	9
ATGTCGA	20	7.0263044E-4	45.000004	40
TCGACCA	20	7.0263044E-4	45.000004	43
TCGACAG	20	7.0263044E-4	45.000004	1
TTCGACG	20	7.0263044E-4	45.000004	25
ACGCGAG	25	3.8850198E-5	45.0	1
AAGTACG	25	3.8850198E-5	45.0	1
TTGTGCG	25	3.8850198E-5	45.0	1
CGCGAGG	55	1.8189894E-12	45.0	2
CGTTCAT	25	3.8850198E-5	45.0	17
TATTGCG	25	3.8850198E-5	45.0	1
GTTCGGA	25	3.8850198E-5	45.0	14
TTCGGAA	25	3.8850198E-5	45.0	15
ACTCACC	70	0.0	41.785713	42
CGTTTTT	480	0.0	40.781246	1
ACACGGG	90	0.0	40.0	3
TACGGGA	90	0.0	40.0	4
CGCACGG	40	3.4486948E-7	39.375004	2
ACGGGAA	75	0.0	39.0	5