SRR3550540_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550540_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	649483
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6164	0.9490625620685991	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1267	0.19507823915329578	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTT	964	0.14842574786407034	No Hit
CTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCT	727	0.11193518537051778	Illumina Single End Adapter 2 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC	721	0.11101137366182025	TruSeq Adapter, Index 22 (95% over 24bp)
CGTTTTCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCT	698	0.10747009544514637	No Hit
CGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTG	659	0.10146531933861241	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATTCG	20	7.0310174E-4	45.0	1
CCGGTAT	20	7.0310174E-4	45.0	42
CGGTAAG	20	7.0310174E-4	45.0	31
GGCGAAA	20	7.0310174E-4	45.0	9
TACGTGA	25	3.888926E-5	45.0	24
TAGTACG	20	7.0310174E-4	45.0	1
TAATCGA	20	7.0310174E-4	45.0	19
TACGCGG	30	2.164039E-6	44.999996	2
GTTAACG	30	2.164039E-6	44.999996	1
GTCAACG	30	2.164039E-6	44.999996	1
CGTTTTT	3135	0.0	41.842106	1
CGGTCTA	70	0.0	41.785717	31
TCGTTGA	95	0.0	40.263157	24
CGCATCG	45	1.9261279E-8	40.000004	21
CGACGGT	80	0.0	39.375	28
CATCGTT	40	3.4551158E-7	39.375	36
CTTACGG	40	3.4551158E-7	39.375	2
GGCTACG	80	0.0	39.375	1
TACGAAT	185	0.0	38.91892	12
CGAATAT	185	0.0	38.91892	14