SRR3550538_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550538_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	605363
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2965	0.48978877136528	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	805	0.1329780644010288	No Hit
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	646	0.1067128318050492	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	25	3.8886104E-5	45.0	38
TTTCGCG	20	7.0306385E-4	45.0	1
CATGACG	20	7.0306385E-4	45.0	1
TAACGCC	20	7.0306385E-4	45.0	12
CTTGACG	20	7.0306385E-4	45.0	1
TGTAGCG	40	6.8066583E-9	45.0	1
TAGTGCG	40	6.8066583E-9	45.0	1
TGCGTTG	20	7.0306385E-4	45.0	1
CGACTGG	30	2.1637934E-6	44.999996	2
CGTTTTT	1495	0.0	39.431435	1
GATTACG	40	3.4546065E-7	39.375	1
CGGGTAT	75	0.0	39.0	6
GCTACGA	105	0.0	38.57143	10
CGCGGGT	35	6.24339E-6	38.571426	4
CCGCAGG	35	6.24339E-6	38.571426	2
ACGGGTA	65	9.094947E-12	38.076927	5
CACGACA	30	1.1392839E-4	37.499996	34
TAACGAG	30	1.1392839E-4	37.499996	1
ATGCGAG	30	1.1392839E-4	37.499996	1
TATCGCG	30	1.1392839E-4	37.499996	1