SRR3550536_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550536_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	495234
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1487	0.30026209832119766	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC	1383	0.2792619246659155	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCG	1318	0.26613681613136414	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGC	1154	0.23302115767495768	No Hit
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	826	0.16678984076214476	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTAACG	20	7.029393E-4	45.0	1
CGGATAT	20	7.029393E-4	45.0	31
GTATCGG	25	3.887579E-5	45.0	2
TATAGCG	25	3.887579E-5	45.0	1
TCGACGT	25	3.887579E-5	45.0	26
TAGTACG	25	3.887579E-5	45.0	1
GTACGAG	25	3.887579E-5	45.0	1
TTAGCGG	90	0.0	42.5	2
CGTAAGG	110	0.0	40.909092	2
GTTAGCG	45	1.9244908E-8	40.0	1
GCGTAAG	45	1.9244908E-8	40.0	1
GCCGAAC	40	3.4529148E-7	39.375	42
ACGGTCG	40	3.4529148E-7	39.375	11
CGATAGT	35	6.241091E-6	38.571426	10
TCGAAAG	35	6.241091E-6	38.571426	1
AGAGACG	35	6.241091E-6	38.571426	1
CTACGAA	90	0.0	37.5	11
CGACGTT	30	1.1389839E-4	37.499996	27
GTAATAC	30	1.1389839E-4	37.499996	22
CGATGTA	30	1.1389839E-4	37.499996	10