SRR3550535_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550535_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	712121
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4993	0.701144889702733	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTC	1116	0.15671494029806732	No Hit
CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	1015	0.14253195734994473	Illumina Single End Adapter 1 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG	1007	0.14140855275999445	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTT	977	0.1371957855476808	No Hit
GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	922	0.12947237899177247	Illumina Single End Adapter 1 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTC	802	0.1126213101425179	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCGCG	20	7.031476E-4	45.000004	1
TCTACGG	40	6.8084773E-9	45.000004	2
ACCGGGT	25	3.889306E-5	45.0	4
CGTTGAT	25	3.889306E-5	45.0	25
CGTTTTT	2670	0.0	41.544945	1
TAGCCGT	50	1.0804797E-9	40.5	44
CTCGCGG	50	1.0804797E-9	40.5	2
ACACGAC	205	0.0	39.512196	26
CGAGACA	200	0.0	39.375	22
CACGACC	210	0.0	38.57143	27
GTACTAG	65	9.094947E-12	38.07692	1
TAAGGGA	635	0.0	37.913387	4
CGTAAGG	95	0.0	37.894737	2
TCTAGCG	30	1.1394858E-4	37.499996	1
CTAACGG	60	1.546141E-10	37.499996	2
CGAATAT	120	0.0	37.499996	14
GCCACTA	30	1.1394858E-4	37.499996	36
TTACACG	355	0.0	37.394367	34
TAGTGCG	55	2.746674E-9	36.818184	1
GCGTATG	55	2.746674E-9	36.818184	1