SRR3550534_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550534_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	546169
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1185	0.21696581094862577	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC	1181	0.21623343690322958	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	1167	0.21367012774434288	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	921	0.16862912395247626	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGC	887	0.1624039445666085	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG	877	0.16057300945311798	No Hit
CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	758	0.1387848816025809	No Hit
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	753	0.13786941404583564	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACAAT	20	7.0300297E-4	45.000004	20
ATGTACG	20	7.0300297E-4	45.000004	1
TCATCGA	20	7.0300297E-4	45.000004	16
CGGTCTA	25	3.888107E-5	45.000004	31
TCGACAA	20	7.0300297E-4	45.000004	19
GCGTACG	25	3.888107E-5	45.000004	1
AGGGATC	215	0.0	41.860462	6
CGAATAT	120	0.0	41.250004	14
GACGTAG	55	6.002665E-11	40.909092	1
TACGGGT	50	1.0786607E-9	40.500004	4
TAGGGAT	305	0.0	39.836067	5
TACGAAT	125	0.0	39.6	12
ACGGGAT	205	0.0	39.512196	5
GTAGGGA	445	0.0	39.4382	4
ATAGGGT	75	0.0	39.0	4
ACAACGA	185	0.0	38.91892	13
ACGGGTA	70	0.0	38.571426	5
AATATAC	135	0.0	38.333332	16
CGGGTAC	65	9.094947E-12	38.076927	6
ATAGGGC	195	0.0	38.076923	4