SRR3550532_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550532_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	757645
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	7421	0.9794824753017575	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5127	0.6767021494235427	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	4330	0.571507764190353	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	3608	0.47621247417985996	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	2174	0.2869417735219001	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	1666	0.21989190188016816	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTT	1019	0.13449570709237177	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT	988	0.13040408106699047	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTC	865	0.11416956490176797	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGTCG	20	7.0317637E-4	45.0	1
GCGCCTA	20	7.0317637E-4	45.0	19
CGAATAA	25	3.889543E-5	45.0	41
CCGCACA	20	7.0317637E-4	45.0	43
CGTCCAA	30	2.1645192E-6	44.999996	29
CGTAAGG	120	0.0	43.124996	2
CGTTTTT	2845	0.0	41.441124	1
TTAACGG	50	1.0804797E-9	40.5	2
CGTCATA	50	1.0804797E-9	40.5	38
GCGTAAG	50	1.0804797E-9	40.5	1
AACACGT	335	0.0	40.298504	41
CGACGGT	45	1.9268555E-8	40.0	28
CGGACGG	85	0.0	39.705883	2
GCTACGA	120	0.0	39.374996	10
ACACGAC	340	0.0	39.04412	26
CACGACC	340	0.0	39.04412	27
CGAACCC	35	6.245469E-6	38.57143	34
TCAAGCG	380	0.0	38.486843	17
GACACGA	350	0.0	37.92857	25
CGAATAT	125	0.0	37.800003	14