SRR3550531_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550531_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	570889
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9075	1.5896260043546118	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTG	1771	0.3102179232740515	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTT	1700	0.29778117987910085	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTC	1165	0.2040676909171485	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCT	1071	0.18760214332383351	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCT	809	0.14170880854246623	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTC	706	0.12366677234979129	No Hit
CCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGC	654	0.11455817155348938	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAG	25	3.8883307E-5	45.0	1
CGCATCG	20	7.0303015E-4	45.0	21
ACGATAG	20	7.0303015E-4	45.0	1
AATTGCG	20	7.0303015E-4	45.0	1
GCGATCG	20	7.0303015E-4	45.0	9
CCAGTCG	20	7.0303015E-4	45.0	28
TCAACGG	20	7.0303015E-4	45.0	2
CGGACTT	20	7.0303015E-4	45.0	15
TTATACG	30	2.1635751E-6	44.999996	1
CGTTTTT	6055	0.0	43.9967	1
GCGCGAC	55	6.002665E-11	40.909092	9
TACGGGT	45	1.9254003E-8	40.0	4
TGTTGCG	40	3.4541517E-7	39.375	1
AACACGT	40	3.4541517E-7	39.375	41
ACACGGG	115	0.0	39.130436	3
TTTACGG	35	6.2427644E-6	38.571426	2
GCGAAAG	70	0.0	38.571426	1
TTCGAAG	35	6.2427644E-6	38.571426	1
AAGGGCG	165	0.0	38.181816	5
GTTTTTT	7140	0.0	37.972687	2