SRR3550529_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550529_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	636406
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5948	0.9346234950644714	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTT	878	0.13796224422774142	No Hit
CGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTG	793	0.12460599051548854	No Hit
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	690	0.10842135366417036	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTC	638	0.10025046904020389	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCACGC	20	7.030911E-4	45.0	22
TCTAGCG	40	6.8066583E-9	45.0	1
CTAACGG	20	7.030911E-4	45.0	2
CGTAGTA	20	7.030911E-4	45.0	38
TTGACCG	25	3.888838E-5	44.999996	1
GTATACG	25	3.888838E-5	44.999996	1
GCGTAAG	50	2.1827873E-11	44.999996	1
CGTTTTT	3340	0.0	42.84431	1
TAGACGG	65	0.0	41.538464	2
TATACGG	60	3.6379788E-12	41.250004	2
ACGGGCC	55	6.002665E-11	40.909092	5
GCGTACG	50	1.0804797E-9	40.499996	1
GACACGA	185	0.0	40.135136	25
CACGACC	205	0.0	39.512196	27
GCGTTAG	75	0.0	39.0	1
ACGTACG	35	6.2438958E-6	38.571426	1
GTAAGCG	35	6.2438958E-6	38.571426	1
GCGAGAC	200	0.0	38.249996	21
TCAAGCG	200	0.0	38.249996	17
AGGGATC	530	0.0	38.207546	6