SRR3550524_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550524_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	470085
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2690	0.5722369358732995	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	1015	0.21591839773657953	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	918	0.19528383164746801	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	877	0.18656200474382292	No Hit
CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT	866	0.18422200240382058	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTT	580	0.12338194156375974	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	568	0.12082921173830263	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTC	476	0.10125828307646488	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCGG	20	7.029027E-4	45.0	2
TACGATA	20	7.029027E-4	45.0	28
CGGATCA	20	7.029027E-4	45.0	6
CGGGCTA	20	7.029027E-4	45.0	6
CCGACGG	20	7.029027E-4	45.0	2
CGCGTCA	20	7.029027E-4	45.0	39
TATACGG	20	7.029027E-4	45.0	2
GACTACG	20	7.029027E-4	45.0	25
TAAACGG	30	2.1627548E-6	44.999996	2
CGTTTTT	1625	0.0	42.646152	1
TACGAAT	75	0.0	42.0	12
CGAATAT	80	0.0	39.375	14
ACGTTAG	35	6.2404106E-6	38.57143	1
TGATTCG	35	6.2404106E-6	38.57143	15
TGTTACG	35	6.2404106E-6	38.57143	1
GGCACCG	100	0.0	38.25	8
TAGGGAC	255	0.0	37.941177	5
AACACGT	125	0.0	37.8	41
GCGATGT	90	0.0	37.5	9
ATTCGGT	30	1.13889575E-4	37.499996	16