SRR3550516_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550516_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	463438
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTC	3816	0.8234111143238145	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGC	3419	0.7377470125453675	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCG	3054	0.6589878257717322	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1901	0.41019510700460476	No Hit
GCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC	1454	0.313742075531139	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC	915	0.1974374134188392	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGCT	748	0.1614023882374773	Illumina Single End Adapter 1 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCT	741	0.1598919380801747	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCT	635	0.13701940712673538	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTC	512	0.11047864007698979	No Hit
CGCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTG	511	0.11026286148308943	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTTTCG	30	2.1626875E-6	45.000004	1
ATTACGG	35	1.209828E-7	45.000004	2
TAGCGCG	30	2.1626875E-6	45.000004	1
CTCGATC	30	2.1626875E-6	45.000004	16
CGATGAT	35	1.209828E-7	45.000004	10
AGGGCGC	35	1.209828E-7	45.000004	6
CAAAACG	20	7.0289243E-4	45.0	1
GAGTACG	20	7.0289243E-4	45.0	1
TTCACCG	20	7.0289243E-4	45.0	23
ACGATAG	20	7.0289243E-4	45.0	1
CGAGACG	25	3.8871898E-5	45.0	15
TATCGCG	25	3.8871898E-5	45.0	1
TATGCGG	60	3.6379788E-12	41.250004	2
ACAACGA	55	6.002665E-11	40.909092	13
AACGAGC	55	6.002665E-11	40.909092	15
CGAATAT	55	6.002665E-11	40.909092	14
CGTTTTT	1275	0.0	40.764706	1
ACACGAC	45	1.9239451E-8	40.000004	26
TACGGGA	135	0.0	40.0	4
TACGGCT	365	0.0	39.452053	7