SRR3550513_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550513_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	582958
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3166	0.5430922982444704	No Hit
GCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	1502	0.2576514946188233	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTC	1245	0.21356598588577563	No Hit
CCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	1130	0.19383900726982045	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGC	916	0.15712967314969517	No Hit
CTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGCT	887	0.15215504375958475	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCG	831	0.142548862868337	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	676	0.11596032647291914	No Hit
CGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	665	0.11407339808356691	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCACGT	30	2.1636533E-6	45.000004	27
TTGCGTG	30	2.1636533E-6	45.000004	1
TGTTACG	35	1.2105556E-7	45.000004	1
TTAACGG	30	2.1636533E-6	45.000004	2
GATCGCC	20	7.0304226E-4	45.0	9
CAGTTAG	20	7.0304226E-4	45.0	1
TAGCGTA	20	7.0304226E-4	45.0	1
CCAGACG	20	7.0304226E-4	45.0	21
TCAGGCG	25	3.888432E-5	45.0	19
TCCCGTA	25	3.888432E-5	45.0	44
ACGTAAG	25	3.888432E-5	45.0	1
TCGAGAG	20	7.0304226E-4	45.0	1
CGTTTTT	1615	0.0	42.492264	1
CGGGTTA	45	1.9255822E-8	40.0	6
TTTAGCG	45	1.9255822E-8	40.0	1
TATAGCG	45	1.9255822E-8	40.0	1
TGATTCG	40	3.4543154E-7	39.375	15
TAGTGCG	35	6.2429917E-6	38.57143	1
TAACGGG	130	0.0	38.07692	3
TTACGGG	190	0.0	37.894737	3