SRR3550512_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550512_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	399319
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	974	0.24391526573992223	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	807	0.2020940651459109	No Hit
GCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC	674	0.16878736048121928	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC	554	0.1387361983777381	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGCT	459	0.1149456950458155	TruSeq Adapter, Index 21 (95% over 23bp)
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	413	0.10342608290614771	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGA	20	7.0277514E-4	45.0	24
CCGATTT	20	7.0277514E-4	45.0	31
CGGTCTA	20	7.0277514E-4	45.0	31
ATAACGG	50	2.1827873E-11	45.0	2
AATAGCG	25	3.8862177E-5	45.0	1
GCGTAAG	20	7.0277514E-4	45.0	1
TTGGACG	30	2.1619308E-6	44.999996	1
GCTACGA	185	0.0	43.783787	10
CGAATAT	185	0.0	41.351353	14
CTACGAA	200	0.0	40.5	11
TACGAAT	190	0.0	40.263157	12
ATAGGGA	275	0.0	40.090908	4
TTGTCGG	45	1.9228537E-8	40.000004	2
TGAACGG	45	1.9228537E-8	40.000004	2
CATACGG	35	6.2380514E-6	38.57143	2
CGTTTGG	35	6.2380514E-6	38.57143	2
AGCTACG	205	0.0	38.414635	9
ACACGAC	30	1.1385884E-4	37.499996	26
CACGACC	30	1.1385884E-4	37.499996	27
CGAGGGT	30	1.1385884E-4	37.499996	4