SRR3550506_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550506_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	530752
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	894	0.16844025081393946	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	872	0.16429518871337273	No Hit
CCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	802	0.151106354757024	No Hit
CTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGCT	649	0.12227933196671892	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCCGT	20	7.0298504E-4	45.000004	15
ATCGTTG	30	2.163284E-6	45.000004	23
GCGATAC	40	6.8030204E-9	45.000004	9
CGATCTA	20	7.0298504E-4	45.000004	10
CGTCAAA	20	7.0298504E-4	45.000004	19
ATTCTCG	20	7.0298504E-4	45.000004	13
AATAGCG	25	3.887959E-5	45.0	1
CGTCCAC	25	3.887959E-5	45.0	39
ACGTTGG	75	0.0	42.0	2
TTAAGCG	50	1.0786607E-9	40.5	1
CTAGGCG	50	1.0786607E-9	40.5	1
TAGCGAG	45	1.9248546E-8	40.0	1
TATGCGG	45	1.9248546E-8	40.0	2
CGTAAGG	90	0.0	40.0	2
TTCTCGG	45	1.9248546E-8	40.0	14
GGCGATA	150	0.0	39.0	8
TGCACGG	75	0.0	39.0	2
TTACCGG	35	6.2419367E-6	38.571426	2
CGTTTTT	565	0.0	38.23009	1
ACACGAC	95	0.0	37.894737	26