SRR3550503_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550503_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	340777
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5235	1.5361952244429642	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTT	775	0.22742145156509977	No Hit
CGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTG	683	0.20042432441156532	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTC	532	0.1561138222356556	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCT	474	0.13909389424755778	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	7.026293E-4	45.000004	1
GTCGCAG	20	7.026293E-4	45.000004	1
ATTAGCG	20	7.026293E-4	45.000004	1
ATTACGG	20	7.026293E-4	45.000004	2
GTATACG	20	7.026293E-4	45.000004	1
CGCAAGT	20	7.026293E-4	45.000004	30
TATACGG	20	7.026293E-4	45.000004	2
GGTTACG	20	7.026293E-4	45.000004	1
GCGAGAC	35	1.208573E-7	45.0	21
CACGACC	35	1.208573E-7	45.0	27
CGGGCTA	35	1.208573E-7	45.0	6
TACGAAT	30	2.1609903E-6	44.999996	12
GCTACGA	30	2.1609903E-6	44.999996	10
CGCCGGT	30	2.1609903E-6	44.999996	28
CGTTTTT	3530	0.0	43.78895	1
CATAAGG	55	6.002665E-11	40.909092	2
GGACCGA	110	0.0	40.909092	8
GACACGA	40	3.4486766E-7	39.375004	25
GTCAAGC	40	3.4486766E-7	39.375004	16
CGAGACA	40	3.4486766E-7	39.375004	22