SRR3550498_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550498_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	226254
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	665	0.29391745560299487	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	450	0.19889151131029728	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	293	0.12950047291981578	No Hit
GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	287	0.12684858610234515	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACTA	35	1.2061537E-7	45.000004	45
ATTACGG	30	2.1577507E-6	45.000004	2
CGGGAAC	35	1.2061537E-7	45.000004	6
CGAAAGG	20	7.0212677E-4	45.0	2
CCGATAT	20	7.0212677E-4	45.0	11
CTAAGGT	20	7.0212677E-4	45.0	22
ACGGGCG	45	3.8198777E-10	45.0	5
TGTTGCG	25	3.8808455E-5	45.0	1
ACGATAG	20	7.0212677E-4	45.0	1
CGCTAGA	20	7.0212677E-4	45.0	24
CGAATAT	55	1.8189894E-12	45.0	14
CGTAAGG	25	3.8808455E-5	45.0	2
GTAAACG	20	7.0212677E-4	45.0	1
TTGGGAC	75	0.0	42.000004	5
CTACGAA	60	3.6379788E-12	41.250004	11
TACGAAT	60	3.6379788E-12	41.250004	12
GCTACGA	60	3.6379788E-12	41.250004	10
TTACACG	55	6.002665E-11	40.909092	34
TCACGGG	45	1.9164872E-8	40.0	3
ACACGGG	45	1.9164872E-8	40.0	3