SRR3550497_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550497_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	446177
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	997	0.22345392075342296	No Hit
GCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC	648	0.1452338421747423	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	594	0.1331310219935138	No Hit
CCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC	569	0.1275278645022043	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCTAG	35	1.2097007E-7	45.000004	1
TAGCGAG	20	7.028642E-4	45.0	1
GCGTTAG	20	7.028642E-4	45.0	1
GTATGCG	25	3.8869563E-5	45.0	1
TTAAGCG	20	7.028642E-4	45.0	1
AGCGCAT	20	7.028642E-4	45.0	27
GTATACG	40	6.7993824E-9	45.0	1
CGGTCTA	25	3.8869563E-5	45.0	31
CACAACG	40	6.7993824E-9	45.0	12
GTAACGG	55	1.8189894E-12	45.0	2
TTGACGG	30	2.1625056E-6	44.999996	2
AGTAACG	30	2.1625056E-6	44.999996	1
AACACGT	80	0.0	42.1875	41
TCGTCCC	75	0.0	42.0	38
TATACGG	65	0.0	41.53846	2
CTCGTCC	80	0.0	39.375	37
CCTCGTC	80	0.0	39.375	36
ACCGGGT	35	6.2396975E-6	38.57143	4
AGACACG	105	0.0	38.57143	24
TAACGGG	100	0.0	38.25	3