SRR3550491_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550491_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	374725
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1068	0.2850090066048435	No Hit
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	556	0.14837547534858897	No Hit
CCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	411	0.10968043231703249	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGTACG	20	7.027193E-4	45.000004	1
CTCGGCA	20	7.027193E-4	45.000004	26
ACTACGG	20	7.027193E-4	45.000004	2
TGTTACG	20	7.027193E-4	45.000004	1
ACGTAAG	20	7.027193E-4	45.000004	1
TGGTCGC	20	7.027193E-4	45.000004	34
ACAACGG	25	3.8857565E-5	45.0	2
TATTGCG	35	1.2089913E-7	45.0	1
TGCGTAG	25	3.8857565E-5	45.0	1
ACAACGA	75	0.0	42.0	13
ACGGGCG	115	0.0	41.08696	5
CGTTCGG	40	3.4499135E-7	39.375004	45
GTAAGCG	40	3.4499135E-7	39.375004	1
CACGTGA	200	0.0	39.375	43
AACACGT	200	0.0	39.375	41
GCGAGAC	220	0.0	38.863632	21
GACGGGC	110	0.0	38.863632	4
TCAAGCG	220	0.0	38.863632	17
ACACGAC	215	0.0	38.720932	26
GACACGA	215	0.0	38.720932	25